Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3875 ATGTCTCACGCTCCACAAACCCTAATGCCTACCGCCGACTCCGAACCTCATGAAACTCCTCCTCCTCCAGGTCTCCTTTCATCTCCGATTCCAAACCCTATCTCTCCTAACCCCATCACGAACCCGGATTCGACCCGAATTCCGACCCTCCTCCACCTTTCCTTCAATCAGGACTCCGGTTGCTTCGCCGCGGGCACGGATCATGGTTTCCGTATCTACAATTGCGATCCGTTCCGCGAGATCTTCCGGCGGGACTTTGGTCCGGGTGGTGGAATTGGATTGGTTCAGATGTTGTTTCGGTGCAACATACTTGCGTTCGTCGGCGGTGGGTCTGACCCAATTTACCCGAGTAATAAAGTGATGATATGGGACGACCATCAGTCCCGGTGCATCGGCGAGCTGTCGTTTCGATCGGAGGTCAAAGGGGTTCGTCTTAGAAGGGACCGAATTGTGGTAGTTCTCGTGCATAAGATATTTGTATATAATTTCGCAGATCTTAAAGTGTTGCACCAAATCGAGACAACGGCGAACCCAAAGGGGCTTTGTGAGGTTTCGCATGTTTCAGGGACAATGGTGTTGGTCTGTCCTGGGTTACAGAAGGGTCAGGTGAGGGTCGAGCATTACGCCTCAAAGCGGACCAAGTTTATAATGGCGCACGATTCTAGAATAGCTTGCTTCGCACTAACGCAGGATGGGCGGTTGCTTGCCACCGCAAGCAGCAAGGGGACTCTGGTTAGGATTTTCAACACTTTGGACGGTTCATTGCTCCAAGAGGTACGGAGAGGTGCAGACCGAGCAGAGATATACAGCCTTGCTTTTTCTACTACTGCTCAGTGGCTAGCTGTCTCAAGTGATAAAGGAACTGTTCATGTCTTCAACCTGAAGGTTGATTCAGGACTATTGGGGCATGACAGAGTGCATAGTGCATCTGAATCTAATCCTGCTAACCCATCAGCAGTTTCATCTCTTTCATTTATTAAAGGTGTGTTGCCCAAGTATTTTAGCTCCGAATGGTCTGTGGCGCAATTTCGCTTGCATGAAGGTTCACAATATATTGTTGCCTTTGGTCATCAAAAGAACACAATTGTAACACTTGGGATGGATGGAAGCTTCTATCGATGCCAGTTTGACCCGGTAAATGGTGGAGAGATGAGCCAagttgaatattataatttcttaaaaCCAGAAGAAACATTCTAG 1200 0.4817 MSHAPQTLMPTADSEPHETPPPPGLLSSPIPNPISPNPITNPDSTRIPTLLHLSFNQDSGCFAAGTDHGFRIYNCDPFREIFRRDFGPGGGIGLVQMLFRCNILAFVGGGSDPIYPSNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLVHKIFVYNFADLKVLHQIETTANPKGLCEVSHVSGTMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGRLLATASSKGTLVRIFNTLDGSLLQEVRRGADRAEIYSLAFSTTAQWLAVSSDKGTVHVFNLKVDSGLLGHDRVHSASESNPANPSAVSSLSFIKGVLPKYFSSEWSVAQFRLHEGSQYIVAFGHQKNTIVTLGMDGSFYRCQFDPVNGGEMSQVEYYNFLKPEETF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3875 399 MobiDBLite consensus disorder prediction 15 38 - -
Sto13g3875 399 SMART WD40_4 209 249 IPR001680 GO:0005515
Sto13g3875 399 SMART WD40_4 40 74 IPR001680 GO:0005515
Sto13g3875 399 SMART WD40_4 336 375 IPR001680 GO:0005515
Sto13g3875 399 SMART WD40_4 252 293 IPR001680 GO:0005515
Sto13g3875 399 SUPERFAMILY WD40 repeat-like 48 295 IPR036322 GO:0005515
Sto13g3875 399 PANTHER AUTOPHAGY-RELATED PROTEIN 18A-LIKE ISOFORM X1 34 399 - -
Sto13g3875 399 Pfam WD domain, G-beta repeat 262 293 IPR001680 GO:0005515
Sto13g3875 399 MobiDBLite consensus disorder prediction 1 43 - -
Sto13g3875 399 Gene3D - 44 381 IPR015943 GO:0005515
Sto13g3875 399 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 34 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3875 Sto-Chr13 40013081 40015762 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3875 K22991 - zju:107411861 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0589 8 3602071 3603201 Sto13g3875 13 40013081 40015762 CCT
Sto13g3875 13 40013081 40015762 Sto8g0193 8 1322097 1324280 ECH
Sto13g3875 13 40013081 40015762 Sto13g3875 13 40013081 40015762 ECH