Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3651 ATGGAAGAGTCCACAATGACGTTCTTCACTCTgtctctcctcctcctctctttcttttctgctTCCCATGCCTTCCCTACccaccatcaccatcaccatcctCCTCGCTCTGCCTCTCACAATTACAGAGATGCCCTCACCAAATCCATCCTCTTCTTTGAAGGTCAGAGGTCAGGCAAGCTCCCTCCTAACCAGAGAATGACTTGGAGGAGAGACTCTGCTCTCTCAGATGGCTCTGCAATGCAGGTTGATTTGGTTGGAGGATACTACGATGCAGGGGACAATGTGAAGTTTGGTTTTCCCATGGCATTCACCGCTACCATGCTTTCATGGAGTGTTATTGAGTTTGGTGGGCTCATGAAAGGTGAATTGCAGAATGCTAGAGAGGCCATTCGATGGGCTACTGATTACCTCCTCAAAGCTACTGCTTATCCTGACACCATTTATGTGGGAGATGCCAACAGTGACCACGCTTGCTGGGAGAGACCTGAAGACATGGATACCCCAAGAAGTGTGTATAAGATTGATAAAAACAACCCTGGTTCAGAAGTGGCGGCTGAAACTGCTGCGGCTCTTGCGGCTGCTTCTCTTGTATTCGAGTTTGCTGATAAATACAGGGGATCCTACAGTGATAGGTTGAAGCCCATTGTATGCCCTTTCTATTGCTCCTACTCTGGTTACGAGGATGAGCTGTTATGGGGTGCTGCTTGGCTGCACAAGGCTACCAAAAACCCAATCTACCTAAACTACATTCAAGTCAACGGTCACACCCTTGGGGCCGGGGATTTGGACAATACATTTGGGTGGGATAACAAGCATGTTGGAGCAAGAATACTTCTTTCCAAGGAATTTCTTGTAAAAAGAGTAGAATCCCTCCACGAGTACAAGGATCACGCGGACAATTTCATCTGCTCCCTAATTCCTGGGGCCTCTTTGTCGTCGTCCCAATATACCCCAGGCGGGCTTCTGTTCAAGATGAGTGTTAGCAACATGCAGTATGTGACGTCCACTTGCTTCCTGCTCGTAGCGTATGCCAAATACTTGACCTCAGCCCACATGGTTGTCCACTGCGGTGGAACCACGGTTAGCCCCAACACGCTTCGGAACATAGCCAAGAAACAGGTGGATTACTTGTTGGGAGATAATCCGCTGAAGATGTCGTACATGGTGGGGTATGGTCCAAGTTACCCGCGAAGGATACACCACAGGGGCTCATCTCTACCGTCCATTGCCATCCACCCTGCCAACATCCAATGCTCAGCAGGCTTTAGCGCCCTCAATTCACAATCCCCCAATCCTAACATATTAGTGGGAGCTGTAGTTGGTGGCCCAGACCTGTATGATAGGTTTCCAGATCAACGGTCAGATTATGCGCAATCAGAACCAGCCACATATATTAACGCACCCCTTCTCGGACCACTGGCTTATTTTGCTCACTCATTCCGCCAATTCTAG 1455 0.4722 MEESTMTFFTLSLLLLSFFSASHAFPTHHHHHHPPRSASHNYRDALTKSILFFEGQRSGKLPPNQRMTWRRDSALSDGSAMQVDLVGGYYDAGDNVKFGFPMAFTATMLSWSVIEFGGLMKGELQNAREAIRWATDYLLKATAYPDTIYVGDANSDHACWERPEDMDTPRSVYKIDKNNPGSEVAAETAAALAAASLVFEFADKYRGSYSDRLKPIVCPFYCSYSGYEDELLWGAAWLHKATKNPIYLNYIQVNGHTLGAGDLDNTFGWDNKHVGARILLSKEFLVKRVESLHEYKDHADNFICSLIPGASLSSSQYTPGGLLFKMSVSNMQYVTSTCFLLVAYAKYLTSAHMVVHCGGTTVSPNTLRNIAKKQVDYLLGDNPLKMSYMVGYGPSYPRRIHHRGSSLPSIAIHPANIQCSAGFSALNSQSPNPNILVGAVVGGPDLYDRFPDQRSDYAQSEPATYINAPLLGPLAYFAHSFRQF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3651 484 Pfam Glycosyl hydrolase family 9 42 472 IPR001701 GO:0004553|GO:0005975
Sto13g3651 484 PANTHER ENDO-1,4-BETA-GLUCANASE 6 483 - -
Sto13g3651 484 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 377 403 IPR018221 -
Sto13g3651 484 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 450 468 IPR033126 -
Sto13g3651 484 SUPERFAMILY Six-hairpin glycosidases 39 480 IPR008928 GO:0005975
Sto13g3651 484 PANTHER ENDOGLUCANASE 17 6 483 - -
Sto13g3651 484 Gene3D - 38 480 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3651 Sto-Chr13 38709866 38711920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3651 6 480 Glycoside Hydrolase AT1G02800 71.976 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3651 K01179 - gmx:100777718 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0465 8 2868675 2870653 Sto13g3651 13 38709866 38711920 CCT
Sto13g3651 13 38709866 38711920 Sto13g3651 13 38709866 38711920 ECH