Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3183 ATGGCTCTCTTTGTGGTTGCTATATTGATCCTTATGGTTCCTTCAAGCCATGGCTCGTGGTCGTGGCCACCTTCACCTGGCTACTGGCCAAGTTCCAAATTCAGGTCTATGAGCTTCTACAAAGGATTCACAAACCTCTGGGGTCCTCAGCACCAAAGCCTAGACCAAAACGCATTAACAATTTGGCTTGATGCAACCTCAGGAAGTGGGTTCAAGTCCGTTCGTCCCTTTCGATCCGGCTACTTTGGTGCTTCCATCAAGCTCCAACCTGGCTACACCGCAGGAGTCATCACTGCTTTTTACCTTTCAAACAACGAAGCACATCCAGGGTTCCACGACGAAGTGGACATAGAGTTTCTGGGCACAACATTTGGGAAGCCTTACACTTTACAGACCAATGTGTACATAAGAGGGAGCGGCGATGGCAAAATCGTAGGCAGAGAAATGAAGTTCCATCTCTGGTTTGATCCCACCCAAAACTTTCACCACTACGCTATATTCTGGAGTCCAAAGGAAATCATATTCCTAGTGGACGACGTGCCCATAAGGAGGTACCCGAGGAAGAGTGAGGCGACGTATCCCGTGAGGCCAATGTGGGTGTATGGTTCGATATGGGATGCGTCATCGTGGGCTACTGAAGATGGAAAATACAAAGCTGATTATAGATACCAACCATTTGTTGCGAGGTACACCAATTTTAAGGCCAGTGGTTGCTCGGCCTACGCACCGGTTTGGTGTCGGCCTGTGTCAGTGTCGCCATATAGGTCCGGTGGGTTGAGCAGGGAGCAATATAGGGCGATGAGATGGGCTCAGAGATACCACATGGTTTATAACTATTGCACTGACCCCAAGAGAGACCATAGCTTAACACCTGAATGTTGGGCTTAA 888 0.4887 MALFVVAILILMVPSSHGSWSWPPSPGYWPSSKFRSMSFYKGFTNLWGPQHQSLDQNALTIWLDATSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIVGREMKFHLWFDPTQNFHHYAIFWSPKEIIFLVDDVPIRRYPRKSEATYPVRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTNFKASGCSAYAPVWCRPVSVSPYRSGGLSREQYRAMRWAQRYHMVYNYCTDPKRDHSLTPECWA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3183 295 Pfam Glycosyl hydrolases family 16 41 222 IPR000757 GO:0004553|GO:0005975
Sto13g3183 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3 294 - -
Sto13g3183 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 3 294 IPR044791 GO:0004553
Sto13g3183 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 18 230 IPR000757 GO:0004553|GO:0005975
Sto13g3183 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 61 280 IPR013320 -
Sto13g3183 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 257 293 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Sto13g3183 295 Gene3D - 20 293 - -
Sto13g3183 295 PIRSF EndGlu_transf 2 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3183 Sto-Chr13 35913856 35915002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3183 1 293 Glycoside Hydrolase AT3G44990 65.529 5.10e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3183 K08235 - gmx:100796698 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0937 8 5901506 5905517 Sto13g3183 13 35913856 35915002 CCT
Sto13g3183 13 35913856 35915002 Sto13g3183 13 35913856 35915002 ECH