Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3148 ATGCGGGGTTTTGTTCCAATGGTGTTGGCCATAGCCACCGTGTTGGTACCGGTATCGGTAGTATACAGCGGATTGCCGGCGAATTTTCTTCCTCTTGAACGGACTATTCCTCTGAGTCAGCGAGTGGAACTGGAAGCGCTTAGAGCACGTGACAGAGCGAGGCATGCTCGAATTTTGAAAGGAGGTGTTGTGGGTGGCGTTGTCGACTTCTCAGTCGAAGGGACTTCCGATCCTTACTCCGTTGGGTACGGGCTGTACTTTACAAAAGTGAAGCTGGGATCTCCTCCAAGAGAATTTAAAGTTCAGATTGATACTGGAAGTGACATACTGTGGGTTGCTTGCAATACTTGCGGTGATTGCCCTCAATCTAGTGACCTGGGGATTGAGCTCAATTTTTTTGATACAGCCAGCTCATCTACGGGCATGCTGGTTTCTTGCTCAGACCCTATATGTACTTCTGCGATTCAAAGTGCTTCGACTGAATGTTCCTCTCAGATGAATCAGTGCAGATACACCTTCCAGTATGGAGATGGAAGTGGGACGTCAGGTTATTATGTATCTGATCTGATGTTTTTTGACATGATACTGGGACAATCTATGCTTGCCAATTCTTCAGCTACTGTTGTTTTTGGGTGTAGCACCTACCAGTCTGGAGAATTGACTAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGACCAGGTGCTCTATCCGTTATCTCACAGTTGTCATCACGGGGGTTAACACCCAAAGTCTTCTCTCATTGCTTAAAAGGAGATGGAAATGGAGGGGGCATACTAGTTCTTGGTGAGATTTTGGAGCCAACTATTGTTTATAGTCCACTTGTCCCATCACACTGTTTTGCAACATCTAACAACCGAGGAACAATAGTTGACTCTGGTACAACATTGGCGTACCTTGTTCAAGAAGCATATGCCTTTTGTCAATGCTCCAGCTTGTCCATTGGATTCATTGGGGTTCCTATATTATTTGTCCAGTATCAAGTTTTATCATTGTCAGATGTGGATAAGTTTCCATTCATACTTCACTCTATAACTACTGCTGTGTCACAATCTGCCAGTCCCATCACTTCAAAAGGATACCAGTGCTATCTGGTTTCAAGCAACATAGGTGATATATTTCCTCCAGTCAGTTTAAATTTTGAGGGCGGGGCATCCATGGTTTTAAAACCTGAACAATACCTTATGCATTATGGTTACCTTGATGGCTCTGCAATGTGGTGTATTGGTTTCCAGAAAGTGCAGGAGGGAGTTACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATTTTTGTCTATGACTTGGCTCATCAACGAATTGGATGGACTAACTATGATTGTTCCTTGTCTGTAAATGTCTCCCTGACCACAAGTAAGGATGAGTACATCAACGCGAGGAAGAGGAGTGCAAGTAGCTCACAGATGGACATTCTCACCAAGTTGCTACCGGTCAGCATCGCCACTCTCTGTTTGTACATAATAGTTTTCATGGAGCACCTACTATTCTTGTGA 1536 0.4382 MRGFVPMVLAIATVLVPVSVVYSGLPANFLPLERTIPLSQRVELEALRARDRARHARILKGGVVGGVVDFSVEGTSDPYSVGYGLYFTKVKLGSPPREFKVQIDTGSDILWVACNTCGDCPQSSDLGIELNFFDTASSSTGMLVSCSDPICTSAIQSASTECSSQMNQCRYTFQYGDGSGTSGYYVSDLMFFDMILGQSMLANSSATVVFGCSTYQSGELTKTDKAVDGIFGFGPGALSVISQLSSRGLTPKVFSHCLKGDGNGGGILVLGEILEPTIVYSPLVPSHCFATSNNRGTIVDSGTTLAYLVQEAYAFCQCSSLSIGFIGVPILFVQYQVLSLSDVDKFPFILHSITTAVSQSASPITSKGYQCYLVSSNIGDIFPPVSLNFEGGASMVLKPEQYLMHYGYLDGSAMWCIGFQKVQEGVTILGDLVLKDKIFVYDLAHQRIGWTNYDCSLSVNVSLTTSKDEYINARKRSASSSQMDILTKLLPVSIATLCLYIIVFMEHLLFL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3148 511 PANTHER ASPARTYL PROTEASES 349 473 IPR001461 GO:0004190|GO:0006508
Sto13g3148 511 PANTHER ASPARTYL PROTEASES 286 347 IPR001461 GO:0004190|GO:0006508
Sto13g3148 511 PANTHER ASPARTYL PROTEASES 5 286 IPR001461 GO:0004190|GO:0006508
Sto13g3148 511 SUPERFAMILY Acid proteases 81 456 IPR021109 -
Sto13g3148 511 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 349 473 - -
Sto13g3148 511 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 286 - -
Sto13g3148 511 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 286 347 - -
Sto13g3148 511 Pfam Xylanase inhibitor N-terminal 86 271 IPR032861 -
Sto13g3148 511 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
Sto13g3148 511 PRINTS Pepsin (A1) aspartic protease family signature 297 308 IPR001461 GO:0004190|GO:0006508
Sto13g3148 511 PRINTS Pepsin (A1) aspartic protease family signature 427 442 IPR001461 GO:0004190|GO:0006508
Sto13g3148 511 ProSiteProfiles Peptidase family A1 domain profile. 86 451 IPR033121 -
Sto13g3148 511 Pfam Xylanase inhibitor C-terminal 369 451 IPR032799 -
Sto13g3148 511 CDD pepsin_A_like_plant 86 455 IPR034161 -
Sto13g3148 511 Gene3D Acid Proteases 70 272 IPR021109 -
Sto13g3148 511 Gene3D Acid Proteases 281 463 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3148 Sto-Chr13 35710255 35715258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3148 84 456 Miscellaneous Gene Families AT1G44130 27.750 6.57e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3148 - - gmx:100804147 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0986 8 6203691 6208430 Sto13g3148 13 35710255 35715258 CCT
Sto13g3148 13 35710255 35715258 Sto13g3148 13 35710255 35715258 ECH