Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2950 ATGCTGAACGTGCTACGCGTTCACCTCCCCTCTGATATACCCATTGTAGGCTGTGAGCTCACCCCTTATGTGCTCTTACGGCGACCCGATAAGATTGTTACCACCGAAGATGTCCCTGAGACGGCCCCTTTAGATGGCCATTTCTTGCGGTACAGGTGGTATCGTGTACAAAGTGATAGAAAGGTTGCTGTCTGTAGCATACATCCATCTGAGCAAGCTGTACTGCAGTGCCTAGGCTGTATTAAGGCCAAAATACCTGTTGCCAAAAGTTACCATTGCTCTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTCTTTTACATGACCGTGCTGCAAGTGCAGTTAATGAAAATGGAGCTGATGAGGAGGAAATATTTGGACGTTATAATAGTTCGGGATCTGGGGTAATCAATGCCAGTTTATCTAGCTCTGCATCAAGTGCTAGCCTAGCAAATGTGTCAGCACCTCTGTATCCAGCTGCTATTACACAACGAAGTGGTGGTGAAACTTGGATAGAAGTTGGACGATCTAAAACGTATACACCAACAGCTGATGACATCGCGCCCTCTCCTAGTCCACGCCGGTTGATTCCAGTTGATGGGATGGCACATATAGATGTAGATGCGCGCATAACATCTTCGGGAACATTTACTGTTCTATCATACAACATTTTGTCTGATGCATATGCTTCAAATGATTTATATAGTTACTGCCCATCATGGGCTCTTTCTTGGCCATACCGAAGGCAAAATTTGTTAAGAGAAATAGTTGGTTACCGTGCAGATATTATTTGTCTTCAGGAGGTACAAAGTGATCATTATGATGAATTTTTTGCCCCTGAGCTGGACAAACATGGTTATTATGGACTATACAAGAGAAAAACTAATGAGGTACTTGGTGGCAACACTAATATAGTTGACGGTTGTGCGACATTTTTCCGTAGAGACAGATTTTCTCATGTGAAGAAATATGAGGTTGAATTTAACAAGGCTGCACAGTCTTTGACTGATGCTATGATTCCAACCACTCAAAAGAAAACTGCGTTGAATCGACTGGTTAAGgaTAATGTTGCGCTAATAGTGGTTCTTGAAGCAAAAGTTAACAATCAGCTAGTTGATAATCCTGGGAAAAGACAACTTCTTTGTGTGGCAAATACACATGTAAATGTCCAACAAGATTTAAAAGATGTCAAACTCTGGCAGGTGCATACTCTCTTGAAAGGGTTGGAGAAAATTGCTGCAAGTGCAGACATTCCAATGTTGGTTTGTGGAGATTTTAATTCAGTTCCTGGAAGCGCTCCTCATGCACTTCTTGCATTGGGGAAGGTAGATCAAATGCATCCAGAATTAGCAGTCGATCCACTTAATATCCTGCGACCTCATAGCAAGTTGGTTCATCAGTTGCCACTGGTTAGTGCATACTCATCCTTTGGAAGAACTGTAGGTCTTGGATTTGACCAGCACAAAAGGAGACTGGATAGTGCAACAAATGAACCCTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGCGGATTCTTTGGTGGTGGAGTCATTGTTGGAGCTATTAGATGAGGAGAGTTTGAGGAAGGACACGGCACTCCCTTCTCCTGAATGGTCATCAGATCATATAGCTCTCTTAGCTGAATTTCGCTGCTGCAAGAATAGATCTAGGCGTTAA 1707 0.4247 MLNVLRVHLPSDIPIVGCELTPYVLLRRPDKIVTTEDVPETAPLDGHFLRYRWYRVQSDRKVAVCSIHPSEQAVLQCLGCIKAKIPVAKSYHCSPKCFSDAWQHHRLLHDRAASAVNENGADEEEIFGRYNSSGSGVINASLSSSASSASLANVSAPLYPAAITQRSGGETWIEVGRSKTYTPTADDIAPSPSPRRLIPVDGMAHIDVDARITSSGTFTVLSYNILSDAYASNDLYSYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYDEFFAPELDKHGYYGLYKRKTNEVLGGNTNIVDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAMIPTTQKKTALNRLVKDNVALIVVLEAKVNNQLVDNPGKRQLLCVANTHVNVQQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLALGKVDQMHPELAVDPLNILRPHSKLVHQLPLVSAYSSFGRTVGLGFDQHKRRLDSATNEPLFTNVTRDFIGTLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2950 568 CDD Deadenylase_CCR4 220 561 - -
Sto13g2950 568 Pfam Endonuclease/Exonuclease/phosphatase family 221 552 IPR005135 GO:0003824
Sto13g2950 568 Gene3D Endonuclease/exonuclease/phosphatase 190 567 IPR036691 -
Sto13g2950 568 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 189 563 - -
Sto13g2950 568 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 34 189 - -
Sto13g2950 568 SUPERFAMILY DNase I-like 213 562 IPR036691 -
Sto13g2950 568 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 189 - -
Sto13g2950 568 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 189 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2950 Sto-Chr13 34473989 34478281 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2950 K12603 - gmx:100808935 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1201 8 7587165 7593533 Sto13g2950 13 34473989 34478281 CCT
Sto13g2950 13 34473989 34478281 Sto13g2950 13 34473989 34478281 ECH