Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0466 ATGGCAGTCTCATCCTCCTTCTTCAACTTCCTCTCCTTCCTCTCCCCCGCAAAGCCATCGCCTCCCAAAACGGCACCACCATCCCAACTCAATTTCCCtctcccatcatcatcatcatcctcttcGTCCGCCCGATCTCCCTCTCAGAGGCACCAGAATCTTCCCGAGGACGACGACGAGACGAAGAATCGGAGCGCATCGGCGGAGTTATCCTCCGTGATGTGTCCGTCTCTGGCGTTCTCGAACACGATGCTGTTCAAATCGGCGTACAACGTGCAGGTGCTGGTGGGAGAGAACGAGTCGGAGGAGAGGTTGCTGAATAGGTTCCGAAGAGAGGTGATGAAGACGGGGCTGATTCAGGAATGCAAGAGAAGGAGGTTCTTCGAGAACAAACAGGATGAGAAGAAGAGGAAAACCCGTGAGGCCGCCAAGCGTAATCGGAGAAGGCCACGTTTTCAGTCAAGATTTTCTACAGAGAATAAGGCAGATGTCCCAACGACAAGCaagaaggaagaggaggaggataaCTGGGATCTACCTGAAGAAGACACTCCCTACTAA 561 0.4884 MAVSSSFFNFLSFLSPAKPSPPKTAPPSQLNFPLPSSSSSSSSARSPSQRHQNLPEDDDETKNRSASAELSSVMCPSLAFSNTMLFKSAYNVQVLVGENESEERLLNRFRREVMKTGLIQECKRRRFFENKQDEKKRKTREAAKRNRRRPRFQSRFSTENKADVPTTSKKEEEEDNWDLPEEDTPY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0466 186 Hamap 30S ribosomal protein S21 [rpsU]. 91 147 IPR001911 GO:0003735|GO:0005840|GO:0006412
Sto13g0466 186 Pfam Ribosomal protein S21 93 147 IPR001911 GO:0003735|GO:0005840|GO:0006412
Sto13g0466 186 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 1 186 - -
Sto13g0466 186 MobiDBLite consensus disorder prediction 51 65 - -
Sto13g0466 186 Gene3D Ribosomal protein S8 106 144 IPR038380 -
Sto13g0466 186 MobiDBLite consensus disorder prediction 18 68 - -
Sto13g0466 186 TIGRFAM S21p: ribosomal protein bS21 92 149 IPR001911 GO:0003735|GO:0005840|GO:0006412
Sto13g0466 186 PRINTS Ribosomal protein S21 family signature 95 103 IPR001911 GO:0003735|GO:0005840|GO:0006412
Sto13g0466 186 PRINTS Ribosomal protein S21 family signature 103 112 IPR001911 GO:0003735|GO:0005840|GO:0006412
Sto13g0466 186 PRINTS Ribosomal protein S21 family signature 115 125 IPR001911 GO:0003735|GO:0005840|GO:0006412
Sto13g0466 186 PRINTS Ribosomal protein S21 family signature 127 137 IPR001911 GO:0003735|GO:0005840|GO:0006412
Sto13g0466 186 MobiDBLite consensus disorder prediction 30 50 - -
Sto13g0466 186 MobiDBLite consensus disorder prediction 130 186 - -
Sto13g0466 186 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 186 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0466 Sto-Chr13 4138990 4140487 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0466 - - mnt:21400598 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1716 8 10952237 10953231 Sto13g0466 13 4138990 4140487 CCT
Sto13g0466 13 4138990 4140487 Sto13g0466 13 4138990 4140487 ECH