Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0272 ATGGGTGCAAGTCGAAAACTCCAGGGAGAGATTGATCGTGTTCTGAAGAAGGTCCAAGAAGGCGTTGATGTCTTCGATAGTATCTGGAATAAGGTTTACGATACTGACAATGCCAACCAGAAGGAGAAATTTGAGGCAGACCTGAAGAAGGAGATTAAGAAGCTTCAGAGGTACAGGGACCAGATTAAGACTTGGATTCAGTCCAGCGAGATCAAGGATAAGAAGGTCAATTCAGATTCATTTCCTTCTAGTTTCTTTTTACATAAGCTTAAGCTCCATCAGTTCCAAAATACTGCTTGGGTTGGCTTGTGTGATAGAGTGGTTAGTGCCTCTTATGAGCAGGCTTTGGTGGATGCTCGTAAGCTCATTGAGCGTGAAATGGAAAGATTTAAGATCTGTGAGAAGGAGACTAAGACCAAAGCTTTCTCCAAAGAAGGCTTGGGCCAACAGCCTAAAACTGATCCTAAGGAGAAGGCTAAATCAGAGACAAGGGATTGGTTAAACAATGTGATTTACTTTTCTAATAATTCTGCTTATTCTAATGCCGGTTTCTGTGACTGGGGTGATCATAATTGGAGTGAGGTTGGGGAGTTGGAATCCCAGATTGATAACTTTGAAGCTGAGCTTGAAGGGCTTTCTGTCAAAAAAGGAAAGAATAGGCCACCCAGATTGACACATCTAGAGACGTCAATTACTCGACACAAGGCTCATATTAAGAAATGTGAATTACTTCTGAGGCTACTAGACAATGATGAATTAAGTCCCGAGCAGGTTAATGATGTCAAAGATTTCTTGGATGACTATGTTGAGCGTAACCAGGAGGACTTTGATGAATTCAGTGATGTTGATGAGCTATACAGTTCATTACCTCTAGACAAGGTGGAGTCTCTTGAAGATCTTGTTACAATTGGTCCCCCAGGCATTGCTAAGGCTGCACCTGGTCTTAGCATAAAGACTTCTGTGGTAGCATCAGCACCAGTGTCAGCTTCAGCATCTCAGACATCTGAGCAAGCTGATGATACTGCATCCCAAGATAGCAATTCTGATATTGTTGCTAGAACTCCACCTGCTAAAAGTAGTGGAATCAGTTCCGCTACTTCAACGCCAGTTGGGAACCATACTACTCCTGCTTCTATGAATGTTTCAACTCATAACCTTTCTGGAGCACCAGCTATTGCATCAGTTCTCCCTGGTTCAAATGCTGTTAGGAGTACCTTGGAGAATCCTAGTTCTGCCAATTCTATATCTTCTGTAAATCCGTCTAGCTCTATAAAGGAAGAAGATATTAATAGCTTCCCTGGACAGAGACTATCTCCATCACTTTCTGATGTCACACTTGTGAGGGGCAGCGGCAGAAACAGCCTGTCTAATCAAGCAACTCCTAGTATCCCTCTTGGTTCAGGGAACATTGTTTCTGGCAATGGAGCCCTTGGTTCAGTCCCATTAGCCTCTGAAATAGCTAAGAGAAACATATTAGGTGCAGATGATCGACTTGGGAGTAGTGGCATAGTTCAGCCTCCTCTTGTATCCCCCATTAGTAATAGAACGATCTTGCCTCAGGCTGTGAAGGGTAATGATGGAACTGCTTCTGTTGACTCTACTAATGTTAACGAGGCTGCAGCTGCATCTGGGAGATTGTTTTCTCCTGCTGCAGTTCCTGGCATGCAATGGAGACCCGGAAGCCCCTTCCAGAACCAGAATGAGATGGGGCAACTTCGTGGAAGAACTGAAATAGCTCCTGATCAAAGAGAGAAATTTTTGCAGAAGTTTCATCAAGTTCAGCAACAAGGGCACAGTACCCTTCTTGGTATGACTTCTCTTGTTGGAGGAAATCATAAGCAATTTTCTGCTCAGCAACAAAACCCTCTATTGCAGCAGCTTAGTTCCCAAGGCTCATCCATTTCCTCTCATTCTGGTCTGGGACTTGGAGCCCAGGCACCTGGCTTCAGTAGTATTTCATCTACCTCACTACAGTTGACATCTAATTCTATCCATTCCCCATCTAACCATAACCAGCAGCAGTTGATGCCAGGTGTTTCTAAAGAGGCTGATTTTGGTAATTCTAAGATCGAAGAACAGCAGCAACAGCATAATTTTCTTGATGAGGGAGCAACTGAATCTACTGCTAGTACTGGCCTTGGCAAGAATCTCATAAACGAAGATGATTTGAATTCCACATATGCTGTAGAATCTCCTGCAGGATTATCTGCCAACCTTCCAGAGCCTGCTCAGACTTCCAAAGACATTGATTTGTCTCCTGGCCAACCTTTGCAATCCAATCAACCTTCTGGAAACCTTGGTGTCATTGGAAGGAGAAGCGGTGCTGACCTTGGTGCCATTGGTGATAACTTTAGTGGATCAAGTGTTATTTCTGGCGGAATGCGTGACCAGTCATATAACTTGCAGATGCTTGAGGCTGCTTACTACAAACTTCCACAACCTAAAGATTCAGAACGTCCAAGGACATATACTCCTAGGCACCCAACAATAACACCTACTAGTTATCCTCAAGTCCAGGCACCCATTGTTAATAATCCTGTCTTTTGGGAGAGAGTAGGCCTTGAACCATTTGGAACTGATACCTTGTTTTTCGCTTTCTATTACCAGCAGAACACCTATCAACAATATTTGGCTgcaaaagaactaaagaagcAGTCTTGGAGATATCACAGAAAGTATAACACATGGTTTCAGCGACACGAAGAGCCAAAAGTTGCTACAGATGAATACGAACAGGGAACATATGTATACTTTGATTTCCATATTGCGAATGATGACCTGCAACATGGGTGGAATGGCCGAAGCTATGCAGCTTTTGAAACGACTGGAAAAAGAATGATGGAGGTGAGATGGTACCCAGTGTGTCTCTTGTCTAATCTGTCAGAGATTCCTGATCAGGAATCTCTGAGAGAGAAGCCTGATCAGGAATCTCTTCTTCACCTCCCAGTGACCCATGGTCACTGGGGTGTTTCACCCCAGTGA 2982 0.4349 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVNSDSFPSSFFLHKLKLHQFQNTAWVGLCDRVVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVIYFSNNSAYSNAGFCDWGDHNWSEVGELESQIDNFEAELEGLSVKKGKNRPPRLTHLETSITRHKAHIKKCELLLRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVESLEDLVTIGPPGIAKAAPGLSIKTSVVASAPVSASASQTSEQADDTASQDSNSDIVARTPPAKSSGISSATSTPVGNHTTPASMNVSTHNLSGAPAIASVLPGSNAVRSTLENPSSANSISSVNPSSSIKEEDINSFPGQRLSPSLSDVTLVRGSGRNSLSNQATPSIPLGSGNIVSGNGALGSVPLASEIAKRNILGADDRLGSSGIVQPPLVSPISNRTILPQAVKGNDGTASVDSTNVNEAAAASGRLFSPAAVPGMQWRPGSPFQNQNEMGQLRGRTEIAPDQREKFLQKFHQVQQQGHSTLLGMTSLVGGNHKQFSAQQQNPLLQQLSSQGSSISSHSGLGLGAQAPGFSSISSTSLQLTSNSIHSPSNHNQQQLMPGVSKEADFGNSKIEEQQQQHNFLDEGATESTASTGLGKNLINEDDLNSTYAVESPAGLSANLPEPAQTSKDIDLSPGQPLQSNQPSGNLGVIGRRSGADLGAIGDNFSGSSVISGGMRDQSYNLQMLEAAYYKLPQPKDSERPRTYTPRHPTITPTSYPQVQAPIVNNPVFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWNGRSYAAFETTGKRMMEVRWYPVCLLSNLSEIPDQESLREKPDQESLLHLPVTHGHWGVSPQ 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0272 993 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 172 IPR007207 GO:0005634|GO:0006355
Sto13g0272 993 Pfam Not1 N-terminal domain, CCR4-Not complex component 194 292 IPR007207 GO:0005634|GO:0006355
Sto13g0272 993 PANTHER BNAA10G16600D PROTEIN 94 934 - -
Sto13g0272 993 PANTHER BNAA10G16600D PROTEIN 1 81 - -
Sto13g0272 993 MobiDBLite consensus disorder prediction 733 767 - -
Sto13g0272 993 Pfam NOT2 / NOT3 / NOT5 family 808 932 IPR007282 GO:0006355
Sto13g0272 993 Coils Coil 41 61 - -
Sto13g0272 993 Gene3D - 790 946 IPR038635 -
Sto13g0272 993 MobiDBLite consensus disorder prediction 328 383 - -
Sto13g0272 993 PIRSF NOT_su_3_5 1 175 IPR012270 GO:0006355|GO:0030015
Sto13g0272 993 PIRSF NOT_su_3_5 186 945 IPR012270 GO:0006355|GO:0030015
Sto13g0272 993 Coils Coil 195 215 - -
Sto13g0272 993 MobiDBLite consensus disorder prediction 733 770 - -
Sto13g0272 993 MobiDBLite consensus disorder prediction 404 440 - -
Sto13g0272 993 PANTHER CCR4 NOT-RELATED 94 934 IPR040168 GO:0030015
Sto13g0272 993 PANTHER CCR4 NOT-RELATED 1 81 IPR040168 GO:0030015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0272 Sto-Chr13 2403421 2413726 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0272 K12580 - gmx:100785965 1330.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1582 8 10146834 10160150 Sto13g0272 13 2403421 2413726 CCT