Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0881 ATGTTGGAGGGTCCATCGTTTCTTGTTTCGAGGGACTTACCAAGCTCATGTGAGGAGGAGAGCAAGTGGATTTACAGTACTGTTCATGTGATGGAGCTCTCAAGCAATAAGCGCCGACTAGAAGATGAAGAACAAATGATGTTAAGAAAGTCGTGCAAACTTTTAGATGCTTCAGAGAAAGGAGAAACACAGATGGATGTGCACAACCGTTCCCTTTCCCATAACCAAAGAAATGATCAAAATCATGCAGCTGATCAGTCAGATTCAAGCTCACTTATCCACCAACTTGGGCGGGACATCTCAATTAACTGTCTCCTTCGATGCTCAAGGTCTGATTATGGCTCAGTTGCCTCAATCAATCAGAATTTTCGATCTCTTATTCGGAGTGGAGAACTATATAAGCTCAGGAGGCAGTTGGGTATTGTAGAACATTGGGTTTACTTCTCTTGTAATCTCCTTGAATGGGAGGCATTCGATCCAAACCGTGTTCGATGGATGCGTTTACCTAGAATGACTTCTAATGAATGCTTTATGTGTTCAGATAAGGAGTCATTGGCTGTTGGTACAGAGCTTCTTGTTTTTGGAAAGGAAATCATGTCTCCTATTATTTACAAatatagtattttgtcaaacaCATGGTCATCTGGTAATGAAATGAATACTCCCAGATGCTTGTTCGGTTCTGCCAGCCATGGAGAAATCGCTATATTGGCTGGTGGTTGTGATCCACGTGGAAACATTTTAAGTTCAGCTGAGCTGTATAACTCAGAAACTGGAACTTGGGAGACTCTTCCAAACATGAACAGAGCAAGGAAGATGTGTTCTGGTGTATTTATGGATGGGAAATTTTATGTTATTGGGGGGATTGGAGTTGGCAATTCAAGACAGCTAACATCTGGTGAGGAGTATGACATACAGGCAAGAAAATGGCGTGAAATACCCAACATGTTCCCTCGGCGAAATGGAGGGGCTGGGGTAACTGAGGCACCAGCTGCTGCCGAAGCGCCTCCTTTGGTTGCAGTTGTAAATAATGTATTATATGCTGCTGATTACGCACTGCAGGAGGTGAGGAGGTACGATAAAGTCAGGAACTTATGGGTCACAATTGGAAGATTGCCTGAACGAGCAGCCTCAATGAATGGTTGGGGATTAGCTTTCCGGGCTTGCGGAGATCGGCTTATTGTCATCGGTGGGCCTAGGGATTTAAATGTAAGGGCAATTGAAGTTAATGCTTGGATCCCTGGCGAAGGCGAACCCCAGTGGAACCTGCTTGCACGCAGGCAATCAGGGAGCTTTGTGTATAATTGTGCAGTGATGGGATGCTGA 1326 0.4404 MLEGPSFLVSRDLPSSCEEESKWIYSTVHVMELSSNKRRLEDEEQMMLRKSCKLLDASEKGETQMDVHNRSLSHNQRNDQNHAADQSDSSSLIHQLGRDISINCLLRCSRSDYGSVASINQNFRSLIRSGELYKLRRQLGIVEHWVYFSCNLLEWEAFDPNRVRWMRLPRMTSNECFMCSDKESLAVGTELLVFGKEIMSPIIYKYSILSNTWSSGNEMNTPRCLFGSASHGEIAILAGGCDPRGNILSSAELYNSETGTWETLPNMNRARKMCSGVFMDGKFYVIGGIGVGNSRQLTSGEEYDIQARKWREIPNMFPRRNGGAGVTEAPAAAEAPPLVAVVNNVLYAADYALQEVRRYDKVRNLWVTIGRLPERAASMNGWGLAFRACGDRLIVIGGPRDLNVRAIEVNAWIPGEGEPQWNLLARRQSGSFVYNCAVMGC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0881 441 SUPERFAMILY Kelch motif 151 438 IPR015915 GO:0005515
Sto12g0881 441 Pfam Kelch motif 222 268 IPR006652 GO:0005515
Sto12g0881 441 Pfam Kelch motif 270 316 IPR006652 GO:0005515
Sto12g0881 441 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 441 - -
Sto12g0881 441 SMART kelc_smart 282 329 IPR006652 GO:0005515
Sto12g0881 441 SMART kelc_smart 190 233 IPR006652 GO:0005515
Sto12g0881 441 SMART kelc_smart 234 281 IPR006652 GO:0005515
Sto12g0881 441 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 1 441 - -
Sto12g0881 441 Gene3D - 135 426 IPR015915 GO:0005515
Sto12g0881 441 Coils Coil 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0881 Sto-Chr12 5522810 5524135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0881 96 315 Miscellaneous Gene Families AT4G33900 25.751 9.57e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0881 - - gmx:100788507 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1526 3 11286502 11288278 Sto12g0881 12 5522810 5524135 ECH
Sto12g0881 12 5522810 5524135 Sto12g0881 12 5522810 5524135 ECH