Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0778 atGCAGTCTTTAACCGCTAAGGCTCTCGTGGATCTGAGGTTACCGGGTCCGGGAGGATCCGGATTCGCGGAGAGAGGCAACCCGGTGAGGAGGCAATGGGTGAATTGCAGAAACCTTAGGAGACCGAGAGGGATCGTAGTCTGTGCTGCAGAAAGGAATGGGAATGGCAGGGGAGAGAGAAGGAGTGTGAGGCAAAGTTCAAGTCCCAGCTCTTTTGCGTCTCGGAGCCACACCTACGCGCTATTAAAGCAACAAATGGAGCTAGCTGCGAAATCTGAGGATTACAAAGAAGCAGCGAGGATTCGTGATTCGATAAGATCATTTGAAGACGACGAGCCTCTTTTGCGTCTGCGGAGATTAATGAAAGAAGCAATTGCTGAGGAGAGGTTTAAGGATGCAGCAAAATATCGAGATGAGCTACGAGAAATGGGCCCACACTCTCTGTTAAAATGTTCCAGTAATGCTACAACCTTGGGCATCAGTGTTCAAGTTAGGAGTGTATTTATAGAGGGCAGAAGTGAGCCCTCAAAGGGGCTTTACTTTTTTGCATACAGAGTCAGAATTTCGAACAATTCCAATCGCCCTGTTCAAATTATTAGAAGGCATTGGATTATAACTGATGCAAATGGGAAAACAGAAAATGTCTGGGGAATTGGGGTTGTTGGTGAACAACCTGTGATGCTTCCTAAGACTAGTTTTGAATACTCTTCAGCATGCCCAATAAGCACACCAAATGGTAGAATGGAAGGTGACTTTGAGATGATACATGTTGATAAAGTAGGTTCACCATCATTTAATGTGGCTATTGctcctttttctctctctctacttgGAGATGGTGATGGTCATACTATTTGA 858 0.4406 MQSLTAKALVDLRLPGPGGSGFAERGNPVRRQWVNCRNLRRPRGIVVCAAERNGNGRGERRSVRQSSSPSSFASRSHTYALLKQQMELAAKSEDYKEAARIRDSIRSFEDDEPLLRLRRLMKEAIAEERFKDAAKYRDELREMGPHSLLKCSSNATTLGISVQVRSVFIEGRSEPSKGLYFFAYRVRISNNSNRPVQIIRRHWIITDANGKTENVWGIGVVGEQPVMLPKTSFEYSSACPISTPNGRMEGDFEMIHVDKVGSPSFNVAIAPFSLSLLGDGDGHTI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0778 285 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 78 109 IPR036876 -
Sto12g0778 285 MobiDBLite consensus disorder prediction 60 76 - -
Sto12g0778 285 Pfam ApaG domain 172 255 IPR007474 -
Sto12g0778 285 ProSiteProfiles ApaG domain profile. 154 281 IPR007474 -
Sto12g0778 285 PANTHER OS05G0170800 PROTEIN 30 280 - -
Sto12g0778 285 MobiDBLite consensus disorder prediction 55 76 - -
Sto12g0778 285 Gene3D ApaG domain 150 280 IPR036767 -
Sto12g0778 285 SUPERFAMILY ApaG-like 156 275 IPR036767 -
Sto12g0778 285 Pfam UvrB/uvrC motif 114 142 IPR001943 GO:0005515
Sto12g0778 285 Pfam UvrB/uvrC motif 82 109 IPR001943 GO:0005515
Sto12g0778 285 ProSiteProfiles UVR domain profile. 76 111 IPR001943 GO:0005515
Sto12g0778 285 ProSiteProfiles UVR domain profile. 111 146 IPR001943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0778 Sto-Chr12 4885862 4888464 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0778 - - jre:109021151 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1407 3 10281738 10284735 Sto12g0778 12 4885862 4888464 CCT
Sto12g0778 12 4885862 4888464 Sto12g0778 12 4885862 4888464 ECH