Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0590 ATGGCCGCTGTtacttccctctctttctcagCATTAACTCAATGCTCTGAAAGAAAACTAACTGCCCCTTCCCCTCGCTTCCTCGCCTTCAATTCCGATGCCTTTCGGCTTCGGACCAATTTCTCCTATCATTATGTAGGTGTTCGATCTTCCAATTCAGCTTCTAGAATGGTTGTTCATTGCATGTCTTCTGCGACAGATGTTCCCACTGTTTCTGAGACAAAACTAAATTTCCTCAAGGCATATAAACGACCAATTCCTAGTATCTACAACAGTGTGTTGCAGGAGCTCATTGTCCAGCAGCATTTAATGAGATACAAGAGATCATACCGTTACGACCCTGTATTTGCACTTGGTTTTGTCACTGTATATGATCAACTCATGGATGGGTATCCTAGTGATGAAGATCGAGAAGCCATCTTCCAAGCATATATTAAGGCATTGAAGGAAGAGCCAAACCAATAtagAATGGATGCACAGAAGTTGGAAGAGTGGGCTCGGGCTCAGAATCCAACCTCCCTGGTTGAGTTTTCTTCCAGAGAAGGAGAAGTTGAGGGGATATTAAAAGATATTGCAGAAAGAGCAGGGGGAAAGGGGGATTTCAGTTATAGTCGTTTTTTTGCAGTAGGCCTTTTTCGACTTCTTGAGTTGGCCAATGCAACAGAACCAACAATTTTGGAAAAGCTTTGTGCAGCTTTGAACATCAGCAAAAGAAGTGTTGATCGAGATTTGGATGTGTATCGTAATCTGCTTTCCAAGTTGGTTCAGGCAAAAGAGCTGCTAAGGGAATATGTTGACAGggagaagaagaaaagagaagaaagaactGAATCTCAAACAGCTAACGAGGCCGTTTCAAAATGTTCAGGACAAAACATCAATCTTCTGGCATGTTGA 897 0.4025 MAAVTSLSFSALTQCSERKLTAPSPRFLAFNSDAFRLRTNFSYHYVGVRSSNSASRMVVHCMSSATDVPTVSETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRSYRYDPVFALGFVTVYDQLMDGYPSDEDREAIFQAYIKALKEEPNQYRMDAQKLEEWARAQNPTSLVEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAVGLFRLLELANATEPTILEKLCAALNISKRSVDRDLDVYRNLLSKLVQAKELLREYVDREKKKREERTESQTANEAVSKCSGQNINLLAC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0590 298 Coils Coil 247 277 - -
Sto12g0590 298 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 286 - -
Sto12g0590 298 Hamap Protein Thf1 [thf1]. 65 273 IPR017499 GO:0010207|GO:0015979
Sto12g0590 298 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 286 IPR017499 GO:0010207|GO:0015979
Sto12g0590 298 Pfam Thylakoid formation protein 70 275 IPR017499 GO:0010207|GO:0015979
Sto12g0590 298 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 67 272 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0590 Sto-Chr12 3767064 3770679 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0590 - - qsu:112004145 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0600 7 4424413 4427526 Sto12g0590 12 3767064 3770679 CCT
Sto12g0590 12 3767064 3770679 Sto12g0590 12 3767064 3770679 ECH