Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0478 ATGGATTCTCCCATCTATGGCGTTATCAGGCGCAGCATCTTCTGCTCCtgtcttctgcttcttctctcCGGCTTCGCATTCTCGGATTCCCCGAATCCCAGGTTGTCGGTAGCTTCTTTTTCCTCATCGGGTCAAATAAACTCCAACTCGGTTCTGGTGGCTCTTTTGGATTCGCATTATACTGAACTGGCTGAGCTGGTGGAGAAGGCTATGCTTTTGCAGACTCTCGAAGACACTGTCGGTACCCACAACGTCACCATCTTCGCACCCAGAAACGAAGCCCTCGAGCGTGATCTCGACCCCCAATTCAAGCGCTTCCTTCTCCAACCCGGGAATCTCATTTCTCTTCAGTCTTTGCTCATGTTTCATATCATTCCCTCTCGAATTGGATCCCATACGCTACCCGCTCAATCCCGCCACCAAACCCTCTTAAACTCTGAATTTCTTCACCTTGCAACTAATGGCACCGCCGAATGGACGGTCAATCGTGCCAACATAATCCACCCGGACGTACTGACCCGACCCGACGGGGTGATCCACGGGATTGACCGCCTCCTAATTCCTCGTTCTGTACAAGACGACTTCAACCGCCGGAGGAGTCTCCGGTCCATAACGGCGGTGAAGCCAGAAGGAGCGCCGGAGGTTGACCCCAGGACACATAGGCTCAAGAAACCCGCTCCCCCGGCGAAACCCGGCTCACCACCCGCACTGCCTATTTATGACGCAATGGCTCCGGGACCCGGTCTGGCGCCCGCCCCGGCACCCGGACCCGGTGGTCCACACCACCACTTCAACGGCGAAGCCCAGGTAAAGGATTTCATTCAGACACTGCTCCATTATGGTGGGTACAATGAAATGGCCGATATTCTGGTGAATCTGACATCCTTAGCAACCGAAATGGGTCGATTGGTGTCGGAGGGTTATGTCCTAACCGTTTTGGCTCCGAACGATGAAGCCATGGCGAAATTGACGACGGACCAGTTGAGCGAACCGGGTGCGCCCGAGCAGATAATGTATTACCATATCATACCCGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTCGACGGTTCGGTAAGGTCCGCTACGATACTCTACGGTTGCCGCACAAGATGGTGGCTCAGGAGGCAGATGGGTCGGTCAAGTTCGGGCAGGGAGACGGGTCGGCTTATTTGTTCGACCCGGATATATACACGGATGGTCGGATCTCAGTGCAGGGAATCGATGGGGTTTTGTTGCcgccagaggaggaggaggtgaaaCCCGTGACCCGGACGGTTCAACCCGCGAAGGTCGTGGTCAAGCAGAGAAGAGGGAAATTGCTGGAAGCAGCGTGCTGGATGCTTGGAAACTTTGGACAGGATTCTAGATTCACCGCTTGCCATTGA 1392 0.5273 MDSPIYGVIRRSIFCSCLLLLLSGFAFSDSPNPRLSVASFSSSGQINSNSVLVALLDSHYTELAELVEKAMLLQTLEDTVGTHNVTIFAPRNEALERDLDPQFKRFLLQPGNLISLQSLLMFHIIPSRIGSHTLPAQSRHQTLLNSEFLHLATNGTAEWTVNRANIIHPDVLTRPDGVIHGIDRLLIPRSVQDDFNRRRSLRSITAVKPEGAPEVDPRTHRLKKPAPPAKPGSPPALPIYDAMAPGPGLAPAPAPGPGGPHHHFNGEAQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKMVAQEADGSVKFGQGDGSAYLFDPDIYTDGRISVQGIDGVLLPPEEEEVKPVTRTVQPAKVVVKQRRGKLLEAACWMLGNFGQDSRFTACH 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0478 463 Pfam Fasciclin domain 295 415 IPR000782 -
Sto12g0478 463 Pfam Fasciclin domain 59 188 IPR000782 -
Sto12g0478 463 SMART fasc_3 311 416 IPR000782 -
Sto12g0478 463 SMART fasc_3 86 189 IPR000782 -
Sto12g0478 463 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 462 IPR044654 -
Sto12g0478 463 SUPERFAMILY FAS1 domain 250 417 IPR036378 -
Sto12g0478 463 MobiDBLite consensus disorder prediction 202 265 - -
Sto12g0478 463 Gene3D FAS1 domain 51 189 IPR036378 -
Sto12g0478 463 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 462 - -
Sto12g0478 463 Gene3D FAS1 domain 289 416 IPR036378 -
Sto12g0478 463 ProSiteProfiles FAS1/BIgH3 domain profile. 47 186 IPR000782 -
Sto12g0478 463 MobiDBLite consensus disorder prediction 227 241 - -
Sto12g0478 463 ProSiteProfiles FAS1/BIgH3 domain profile. 270 398 IPR000782 -
Sto12g0478 463 SUPERFAMILY FAS1 domain 49 189 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0478 Sto-Chr12 3140930 3142957 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0478 - - qsu:112040765 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0706 7 5189500 5191950 Sto12g0478 12 3140930 3142957 CCT