Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0447 ATGGTCACTCAAGAGTCGAAATCGAAACCCGTCCAGATCCGAGAAGTATGGGCGTCTAATCTCGAATCCGAGTTCCACCTCATCCGCCAAGTCATTGATCGATACCCTTTTATCTCCATGGACACCGAATTCCCCGGCGTCATCTTCCGGCCCCACCTCAATCCCACCCTGCCCTACCACCACCGTCGACTCCTACCCGCCGATCACTACCGCCTCCTTAAGGCCAACGTCGACGCCTTGAACCTCATCCAGGTCGGTCTCACCCTCTCCGATGCCGACGGTAACCTGCCCGACCTCGGATCTGGCAACCGCTTCATCTGGGAGTTCAATTTCAGGGACTTCGACGTGGCGCGTGACGCCTACGCTCCTGATTCCATCGAGTTGCTCCGGCGGCAGGGGATCGACTTCCGGCGAAACGCCGAGGACGGTGTGGACTCGGCCCGGTTCGCGGAGTTGATGATGTCGTCGGGACTGGTGTGCAACGAATCGGTGAGTTGGGTGACGTTTCACAGCGCGTATGATTTCGGGTACCTGGTGAAGATCCTGACCCGACGGAGCTTACCGAACGGAGTAGAGGAATTCCTGAGGATGTTGAGGGTGATTTTCGGAAACAACGTTTATGACGTGAAGCACATGATGCGGTTCTGTGAGAGCCTGTACGGAGGTTTGGAGCGGGTAGCCCGGACGCTCAACGTGAACCGGGCGGTTGGGAAGTGCCACCAAGCCGGGTCAGACAGCTTGCTGACCTGGCACGCATTCCAGAAAATGAGGGATGTTTACTTTGTAAAGGATGGGCCGGAGAAACATGCCGGCGTGTTGTATGGATTAGAGGTTATGTGTTAA 843 0.5647 MVTQESKSKPVQIREVWASNLESEFHLIRQVIDRYPFISMDTEFPGVIFRPHLNPTLPYHHRRLLPADHYRLLKANVDALNLIQVGLTLSDADGNLPDLGSGNRFIWEFNFRDFDVARDAYAPDSIELLRRQGIDFRRNAEDGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPNGVEEFLRMLRVIFGNNVYDVKHMMRFCESLYGGLERVARTLNVNRAVGKCHQAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVMC 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0447 280 Pfam CAF1 family ribonuclease 16 145 IPR006941 -
Sto12g0447 280 Gene3D - 2 279 IPR036397 GO:0003676
Sto12g0447 280 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 7 278 - -
Sto12g0447 280 SUPERFAMILY Ribonuclease H-like 13 276 IPR012337 -
Sto12g0447 280 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 7 278 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0447 Sto-Chr12 2854541 2855383 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0447 K12581 - qsu:112026170 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0741 7 5495315 5496618 Sto12g0447 12 2854541 2855383 CCT
Sto12g0447 12 2854541 2855383 Sto12g0447 12 2854541 2855383 ECH