LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto12g0368	TTGTTGATTTGGTCGGCGGCGGCGGCGATTCCGGTGAGTCTAACACTAGAAAGAGCATTTCCGACGTCCAATAATGGAATGAAGTTGCGTGGGCTTCGAGCTCTGGACAATGCCAGGCATCGCAGATtgcttaatcagttttccaATCCCGACGCTGATTTCCCACTTGCCGGTACCTATGATCCATACGTAATCggACTTTACTATACGAAGGTGCGATTGGGTTCTCCACCAAGAGATTTTCATGTGCAGATTGACACAGGCAGCGACGCTCTCTGGGTTAGCTGCGTCTCCTGTTCTGGTTGCCCCAAAAAAACTACGCTCAACGTAAATCTGACTTCTTTTGACCCCGAGACATCATCGTCGTCTTCAATGGTTTCTTGTTCAGAAGAAATATGCGACAGTGACTACGTATCATCGGAGGCCGTGTGTTCGAATAAACGCTGTTCTTACACATTCGAGTATGCAGACAATAGTGCGTGTACAGGATATTACGTAATGGACTTGATTCATTTTGCCACCGCCATTTCAAATACTTCATCCCATGTCCTCTTTGGATGTAGCACGGAGCTGAGAGGGAGCTTGGCGAAGAATGAAAGAGGAGTTGACGGTATCTTTGGGTTTGGGCCACGTGGGCTTTCCGTGATATCACAGCTGTCCTCAAAAGGATTAGCACCCTCTGTCTTCTCTCATTGCCTCAAAGGTGACCAACAAGGTGGAGGCAAGTTGGTTCTCGGCGAAATTCTGCATCCAAATATTGTTTACACTCCACTCCTTCCTTCACAGTACCTACAACTGAAGAGCATCCAAGTGAATGGCAAAAATATACCAATTACTCTATCAACCTTATCACCATCATCAATCTTTGAAGCATCACACAAGGGAGTAGCCACCGTGGTTGATTCTGGAACCACTATGGCATACCTTCCAGAAGGGGTGTACGAACACTTTGTTCAAGCGATTGCAGATGAAATTCCGGCAGACTCCGTTCTCGGCGCTTATGTTGCCGATGAAAGTCTCTGTTTCTTAACCAGTGATGGTAAAGAAGGGTGGTGTATGGGGTTTCAAAAACTCCAGGTTCAGGGTGCAGGTGAAGGGCTAATACTTTTAGGAGATATCGCATTGAAAGATCGAATTGTCGTTTATGATCTGGCTGGTCAACGTATTGGATGGACTGACTATGACTCTGAAATTTCGGAGGGAGATGTCAAAGATGAAGTCATGGGTGGCTGCAGATCGGACGAAGCAGCTGAGGGAGCATCCGGCATCACCATTGGAATAGAACTTTCAGCAAGATCTCCGTGCAACGTTGATGGCTCCTACTTTGACTCGACGAAAGCTGCTGCTGTTGGAGGGGTTGCCCGCGATGCCTCGGGAAATTTTCTGTTCAGCTTCTGTCACCGTGTTGGCTTGTGCGATATTCGATGGGCAGAACTGAGAGGTGTTCTTGATGGTTTGGATCTGCTCTGGAGCAAGGGATTTAGAAGAGTGGTGATCGAAAGTGACTCGGAAGTTGCCTTAGATTTGATCAAGAATGGTGTGGATCAAAGCCACCATGTTTCCGGTTTGGTGCATCAGATTAGAAGCCTTATTAATCAAAATTGGGATGCTGAATTGGTACATGTATTCCGAGAAGCAAACCATGCCGCCGACTTCATGGCAAAGCTTAGCCATTCGCTCCCTAATGGTTTGCATGTGTTTGAAAGGCCTCAAGCGGGTCTAGGAAAGATTCTTGCTAATGATCTTTATGGTTATTTAATTTCTCGCTTGTGCGTTTGCTAG	1782	0.4624	LLIWSAAAAIPVSLTLERAFPTSNNGMKLRGLRALDNARHRRLLNQFSNPDADFPLAGTYDPYVIGLYYTKVRLGSPPRDFHVQIDTGSDALWVSCVSCSGCPKKTTLNVNLTSFDPETSSSSSMVSCSEEICDSDYVSSEAVCSNKRCSYTFEYADNSACTGYYVMDLIHFATAISNTSSHVLFGCSTELRGSLAKNERGVDGIFGFGPRGLSVISQLSSKGLAPSVFSHCLKGDQQGGGKLVLGEILHPNIVYTPLLPSQYLQLKSIQVNGKNIPITLSTLSPSSIFEASHKGVATVVDSGTTMAYLPEGVYEHFVQAIADEIPADSVLGAYVADESLCFLTSDGKEGWCMGFQKLQVQGAGEGLILLGDIALKDRIVVYDLAGQRIGWTDYDSEISEGDVKDEVMGGCRSDEAAEGASGITIGIELSARSPCNVDGSYFDSTKAAAVGGVARDASGNFLFSFCHRVGLCDIRWAELRGVLDGLDLLWSKGFRRVVIESDSEVALDLIKNGVDQSHHVSGLVHQIRSLINQNWDAELVHVFREANHAADFMAKLSHSLPNGLHVFERPQAGLGKILANDLYGYLISRLCVC	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto12g0368	593	Gene3D	-	432	558	IPR036397	GO:0003676
	Sto12g0368	593	Pfam	Reverse transcriptase-like	436	555	IPR002156	GO:0003676\|GO:0004523
	Sto12g0368	593	Gene3D	Acid Proteases	47	247	IPR021109	-
	Sto12g0368	593	Pfam	Xylanase inhibitor C-terminal	263	345	IPR032799	-
	Sto12g0368	593	PANTHER	ASPARTYL PROTEASES	9	328	IPR001461	GO:0004190\|GO:0006508
	Sto12g0368	593	Pfam	Xylanase inhibitor N-terminal	68	246	IPR032861	-
	Sto12g0368	593	SUPERFAMILY	Acid proteases	63	395	IPR021109	-
	Sto12g0368	593	PANTHER	EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN	9	328	-	-
	Sto12g0368	593	PANTHER	EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN	350	412	-	-
	Sto12g0368	593	PRINTS	Pepsin (A1) aspartic protease family signature	74	94	IPR001461	GO:0004190\|GO:0006508
	Sto12g0368	593	PRINTS	Pepsin (A1) aspartic protease family signature	298	309	IPR001461	GO:0004190\|GO:0006508
	Sto12g0368	593	PRINTS	Pepsin (A1) aspartic protease family signature	368	383	IPR001461	GO:0004190\|GO:0006508
	Sto12g0368	593	CDD	RNase_H_like	435	555	IPR044730	-
	Sto12g0368	593	PANTHER	ASPARTYL PROTEASES	350	412	IPR001461	GO:0004190\|GO:0006508
	Sto12g0368	593	SUPERFAMILY	Ribonuclease H-like	436	561	IPR012337	-
	Sto12g0368	593	Gene3D	Acid Proteases	248	346	IPR021109	-
	Sto12g0368	593	Gene3D	Acid Proteases	347	399	IPR021109	-
	Sto12g0368	593	CDD	pepsin_A_like_plant	68	391	IPR034161	-
	Sto12g0368	593	ProSiteProfiles	Peptidase family A1 domain profile.	68	392	IPR033121	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto12g0368	Sto-Chr12	2318246	2328161	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto12g0368	54	395	Miscellaneous Gene Families	AT1G44130	27.820	5.92e-29	117

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto12g0368	-		K00924	gmx:100789004	392.504

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto7g0850	7	6451714	6456057	Sto12g0368	12	2318246	2328161	CCT
	Sto12g0368	12	2318246	2328161	Sto12g0368	12	2318246	2328161	ECH