Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0346 ATGTCTCCTCTCATGATCTTCTATCTTCTCTTATTCTCTCTCATGCTTTCTCCAAGCAATGCTCAGGGTGGTCCACCTTCACCTGGCTACTACCCAAGTTCCAATATTAGTCCTCTTAGCTTTGATCAAGGCTTCAGAAACCTCTGGGGTCCTCACCATCAGAGACTAGACCAGGGCTCTTTAACTATCTGGCTTGACTCTAACTCAGGGAGCGGATTCAAGTCACTGCAATCTTATCAATCTGGCTACTTTGGTGCTGCCATTAAGCTTCAACCTGGGTATACTGCAGGGCTGTCAAACAACCAAGACCACCCGGGAAACCATGATGAAATTGACATTGAGTTCCTTGGTACGACACTAGACAAGCCATATGTGTTGCAGACAAATGTGTACATCAGAGGAAGTGGAGATGGGAATATTATAGGCAGAGAAATGAGGTTTCATCTTTGGTTCGACCCAACTCAAGATTTTCACAACTATGCTATCCTATGGAAACCCAATGAGATCATattcCTAGTGGACGATGTGCCCATAAGGAGGTATCCTAGGAAGAGCGATGCCACATACCCTACAAGACCAATGTATGTGTACGGATCAATATGGGATGCTTCGGATTGGGCTACAGAGGAGGGAAAATACAAAGCAGATTATAAATACCAACCTTTCATAGGTAGGTACAAGAATTTCAAACTCAAAGGTTGCACCACTAGTGTGGCATGCCAACCACCCTCTGCCTCACCATCTGGTTTTGACAGTCTGAGCCCCCAGCAATATGGCACCATGCAATGGGTCCAAAACAACTATTTGGTCTATAACTATTGCCATGACCCTCGCAGAGACCACACTCTCACTCCAGAGTGTTAA 864 0.4514 MSPLMIFYLLLFSLMLSPSNAQGGPPSPGYYPSSNISPLSFDQGFRNLWGPHHQRLDQGSLTIWLDSNSGSGFKSLQSYQSGYFGAAIKLQPGYTAGLSNNQDHPGNHDEIDIEFLGTTLDKPYVLQTNVYIRGSGDGNIIGREMRFHLWFDPTQDFHNYAILWKPNEIIFLVDDVPIRRYPRKSDATYPTRPMYVYGSIWDASDWATEEGKYKADYKYQPFIGRYKNFKLKGCTTSVACQPPSASPSGFDSLSPQQYGTMQWVQNNYLVYNYCHDPRRDHTLTPEC 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0346 287 SUPERFAMILY Concanavalin A-like lectins/glucanases 40 287 IPR013320 -
Sto12g0346 287 Pfam Glycosyl hydrolases family 16 42 218 IPR000757 GO:0004553|GO:0005975
Sto12g0346 287 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 20 226 IPR000757 GO:0004553|GO:0005975
Sto12g0346 287 PIRSF EndGlu_transf 6 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Sto12g0346 287 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 252 287 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Sto12g0346 287 Gene3D - 21 287 - -
Sto12g0346 287 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 6 287 - -
Sto12g0346 287 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 6 287 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0346 Sto-Chr12 2159954 2161321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0346 4 287 Glycoside Hydrolase AT3G44990 63.356 2.40e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0346 K08235 - gmx:100776165 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0886 7 6779805 6781241 Sto12g0346 12 2159954 2161321 CCT
Sto12g0346 12 2159954 2161321 Sto12g0346 12 2159954 2161321 ECH