Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0187 ATGGCTGCCAATTCTTCAAATGGAGATCACCAAACATCTACAAAGCCACCACCATTGCCATCTCCCTTGCGTTTTTCCAAATTCTTTCAGTCCAACATGAGAATTTTGGTTACTGGAGGAGCTGGATTCATTGGATCTCACCTAGTGGATAGATTgatggaaaatgaaaaaaatgagGTAATTGTTGCTGATAACTACTTCACTGGATCCAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTTGAGCTAATCCGTCATGATGTCACGGAGCCTTTGTTGATTGAGGTTGATCAGATTTACCATCTTGCATGTCCTGCTTCTCCTATCTTCTACAAATACAATCCTGTGAAGACAATAAAGACAAATGTGATTGGTACACTAAACATGCTTGGGCTTGCAAAGCGAGTTGGAGCAAGGATTTTGCTTACATCAACTTCCGAAGTTTACGGAGATCCTCTTGTGCATCCACAACCTGAAAGCTATTGGGGCAATGTAAACCCCATAGGAGTTCGGAGCTGCTATGATGAGGGAAAGCGTGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGAAATACGCATAGCAAGGATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCCCTTCGCAATTTATCTGTATGCTTGACATTAACTAATGAGCATGTTGGTGACTTGCTAGATCATGGTGAACCATTGACAGTCCAATCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGGTTGATGGCCTAATCCGTCTAATGGGAGGGGAGAACACTGGTCCAATCAACCTTGGAAACCCAGGGGAATTTACAATGGTTGAGCTTGCTGAGACAGTGAAGGAGCTTATCAATCCAGCAGTGGAGATAAAGATGGTGGAGAACACTCCTGATGACCCTCGACAGAGAAAACCAGACATAACAAAAGCAAAGGAATTGCTGGGTTGGGAACCAAAGGTGAAGTTGCGTGATGGCCTTCCTCTTATGGAAGAAGATTTCCGTCTCAGGCTTGGGGTTGGGAAAAAGAAGAACTAG 1101 0.4296 MAANSSNGDHQTSTKPPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRNLSVCLTLTNEHVGDLLDHGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMGGENTGPINLGNPGEFTMVELAETVKELINPAVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGVGKKKN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0187 366 CDD UGD_SDR_e 33 356 - -
Sto12g0187 366 Pfam GDP-mannose 4,6 dehydratase 36 349 IPR016040 -
Sto12g0187 366 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 247 364 - -
Sto12g0187 366 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 1 232 - -
Sto12g0187 366 MobiDBLite consensus disorder prediction 1 21 - -
Sto12g0187 366 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 356 IPR036291 -
Sto12g0187 366 Gene3D - 32 242 - -
Sto12g0187 366 Gene3D - 243 358 - -
Sto12g0187 366 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 232 IPR044516 GO:0042732|GO:0048040|GO:0070403
Sto12g0187 366 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 247 364 IPR044516 GO:0042732|GO:0048040|GO:0070403
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0187 Sto-Chr12 1127232 1131058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0187 30 348 Miscellaneous Gene Families AT1G02000 23.077 1.18e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0187 K08678 - gmx:100782830 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g1133 7 9380708 9387216 Sto12g0187 12 1127232 1131058 CCT
Sto12g0187 12 1127232 1131058 Sto12g0187 12 1127232 1131058 ECH
Sto12g0187 12 1127232 1131058 Sto7g1133 7 9380708 9387216 ECH