Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0183 ATGGCGTCTCAAGCTAGCCTTCTCCTTCAAAAGCAACTCAAAGATCTTTGCAAAAACCCTGTCGACGGCTTCTCCGCCGGTTTAGTGGACGAAAACAACATATTTGAATGGAGTGTTACGATAATTGGACCTCCCGATACTCTTTATGAGGGTGGATTCTTCAACGCCATTATGAGTTTTCCATCCAATTACCCAAACAGCCCACCATCAGTGAAATTCACCTCAGAGATATGGCATCCCAACGTATATCCTGATGGACGAGTTTGCATATCAATTCTTCATCCTCCTGGTGATGATCCAAATGGTTATGAACTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAAAGCATAGTATTGAGTATCATATCTATGCTTTCTAGTCCTAATGATGAATCTCCGGCAAATGTTGAAGCTGCTGTTCTGATATATGGTCAGACTTCAGAGAAACAAAAGCAAAGTCATTCTAAGTGCCGCCAAGTTTTGTCATTTGCTGGATATTCATATTTACTCGTCTCCCACCCCGCCCTCCAGATACTTCCTGTTGTCAGTTCACACGGGGGACAATATTCTAGCATGAACAAGAGCCCTAAACCAAGCAGTGTCACCACTGGGAGAAAAGCATATAAAAAATCACTTGTTGCATCTTTCCCTAATGGTTTTGTACAGAGGAATCATGAACATCCTGTTTCACTGATTTATGGTGGCTTTAGAAGTAGTGCTGTGGGTCATATAACTGTTTTCTTACTAAAAGCTGCTGCATTAGAGACTGTAAGAAGGTTCTCAAAAAGGAGGTTTTCATATGCATGGAGAGGGCTCCAGGCTCTACATATCCTTTGCTATCCACCATTTAAATGGATTCAAAGATGGACACCCTTCAAGGGTTTGGTCAAAAGCATGCAGATCCTATCAAGACCGTTACTAGTCATTTCTATTGCAACCGCTTTTTCTGAGCAATCAGAATGCAGTGATGGAATTTCGGATTGTATCACTGACTCCCATGATTCAGAAATATACTCAGAACTATCTGTGCCTGCCAAATTGAATGATAGTCTTTCTGGTACAGATCCTGAAATTTTAGAATCTGAAAACTGGTTAGTTCGACTCAACAAAGAACTGGAAAATGAAGGGATTAGCTTACCAGAAAGAATTAATGAGGATGAACTCCGAAGATTTTATTCAGCCTCGGATAATGACTTTTCATGCTTCCTTACTTTAATCAAGAAGACAATACACTGGAGGGAGAGTTACACGATTCTTTCAAGAGATGAGCTTGAAATGTGGTCAAATATGGTGTTCTGGCATGGGTCTGATGTGAAGCACAGACCTTGTCTCATTGTAAGGCTTGGGCTAGCTTGCAGCACATTGGCATCTCAAGATAGACCTCGATTTTCTCAGGCAATCATATCTCAGGTAGACTATGGAGTTTTACACTTGGTTGATGCAGAGTACCCTCAAATTACAGTGTTGGTGGACTGTGAAGGGTTATCTCCATTGAGAATTCCCATGAAAATGATTAGATCTTGTTCTTCCCTTCTGCAAGATCACTTTCCTAACCGTCTTGGTTGCTTGTTTGTCATACGACTTCCAGCGGTTGTTCGTGTTATTGCCCAGACTTTCATTCAGGTTTTTAAGCCTGCTACTAGGAAAAAGTTGAAAATAGAAGGTGAGATGTACCAGAAGGTTCTTGCTGAGTATCTTCCGACACTTCCATCAATTTTTGGAGAGAACTGTACTTGCATAAGTTGTTCCAAAGTTGGCATCACGAGGGAAAATGCGCATTCTCATGCAACTGGGACCACTAGGATAATTAGGGAGGATGATATTGGTGACAATAACAAGTCTGCGTCACCACATCCATCTAATGAATCGGATGGCCACTCAAATGGTTATTATGACAAGTTGCTGAGAAGTACTATCATAAGTTTTCTCATATTTTGGGCTTCTATAGCTCTTATTGCTGGAATATATGTTACCAGTAGAAGTCGTTTTCCCTTGTGA 2004 0.4122 MASQASLLLQKQLKDLCKNPVDGFSAGLVDENNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAVLIYGQTSEKQKQSHSKCRQVLSFAGYSYLLVSHPALQILPVVSSHGGQYSSMNKSPKPSSVTTGRKAYKKSLVASFPNGFVQRNHEHPVSLIYGGFRSSAVGHITVFLLKAAALETVRRFSKRRFSYAWRGLQALHILCYPPFKWIQRWTPFKGLVKSMQILSRPLLVISIATAFSEQSECSDGISDCITDSHDSEIYSELSVPAKLNDSLSGTDPEILESENWLVRLNKELENEGISLPERINEDELRRFYSASDNDFSCFLTLIKKTIHWRESYTILSRDELEMWSNMVFWHGSDVKHRPCLIVRLGLACSTLASQDRPRFSQAIISQVDYGVLHLVDAEYPQITVLVDCEGLSPLRIPMKMIRSCSSLLQDHFPNRLGCLFVIRLPAVVRVIAQTFIQVFKPATRKKLKIEGEMYQKVLAEYLPTLPSIFGENCTCISCSKVGITRENAHSHATGTTRIIREDDIGDNNKSASPHPSNESDGHSNGYYDKLLRSTIISFLIFWASIALIAGIYVTSRSRFPL 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0183 667 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Sto12g0183 667 Gene3D - 361 605 IPR036865 -
Sto12g0183 667 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 423 583 IPR001251 -
Sto12g0183 667 Pfam Ubiquitin-conjugating enzyme 9 154 IPR000608 -
Sto12g0183 667 SMART sec14_4 427 580 IPR001251 -
Sto12g0183 667 SUPERFAMILY UBC-like 3 152 IPR016135 -
Sto12g0183 667 SMART ubc_7 7 158 - -
Sto12g0183 667 PANTHER SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN 193 662 - -
Sto12g0183 667 Pfam CRAL/TRIO domain 431 569 IPR001251 -
Sto12g0183 667 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Sto12g0183 667 MobiDBLite consensus disorder prediction 598 629 - -
Sto12g0183 667 CDD UBCc 17 143 IPR000608 -
Sto12g0183 667 CDD SEC14 424 576 IPR001251 -
Sto12g0183 667 Gene3D Ubiquitin Conjugating Enzyme 2 165 IPR016135 -
Sto12g0183 667 MobiDBLite consensus disorder prediction 615 629 - -
Sto12g0183 667 SUPERFAMILY CRAL/TRIO domain 428 582 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0183 Sto-Chr12 1091394 1101354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0183 11 131 Miscellaneous Gene Families AT3G17000 33.077 1.67e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0183 - - gmx:100814843 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g1135 7 9408380 9412826 Sto12g0183 12 1091394 1101354 CCT
Sto12g0183 12 1091394 1101354 Sto12g0183 12 1091394 1101354 ECH