Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1514 ATGGCTTCTCTCTCTACTCTGTTTTCTCTAATTTTGGTTCTTTCATCTTCTGGAGTTTTCTACACAGCACAATCAAAGACATTTTGGGGAGACATTCAAGTTCTGAAACAACTAAAGTACGCACTCCAAAACGCCTCTGTGACTCCCGGTTCGTGTCTGAGTTCCTGGGACTTCACCCTCGACCCATGCGACAACCTCTTCAGCGAGAAATTCACGTGCGGCTTCAGATGCGACGTCGTCGTTTCCGGCTCAAGCCGCCTCACCGAACTCACCCTCGACCAAGCGGGTTACGCCGGTTCGCTCGCCTCATCATCCACTTGGAATCTTCCTTATTTAGAAACCCTCGACGTCTCTAATAACTACTTCTCCGGCCAGATTCCCGAGTCACTATCGAACCTGACTCGCCTGCGCCGACTCGCTCTCTCGGGAAACTCGTTCACCGGTGAGATTCCGTCTTCCATTGGATCCCTCTCGAATCTCGAAGAATTATACCTTGATAATAACAACCTGGAAGGACCAATCCCGTCAAGTTTGAACAAGCTGAAGAGATTAAAGAGGCTGGAAATTCAAATCAACAATCTCAACGGTCATATTCCTACTGATTTGGGTTCTCTCACCGACCTTTATTACCTGGACATCAGCGACAACGCCATCACCGGCGGAATTCCGGCGTCGTTGCCGAATTCGTTAGTTGAACTCTCAGCGAGAAACAACAGTTTGAGTGGGTTCTTAACGTCGGAAAGCTTTAGGGATTTAATGTATTTACAggttttggatttgagttaTAACAAATTGACCGGCTCTGTTCCAATTGTGCTATTCGAGATTCCGTCGCTTGAACAATTATCTCTCTCGTTCAATGAATTGTCTTCCATGGAAATTCCGGCGTCGTCGTCGTCTTACAATTTGGGGTCTGAAAGTGGGCTGATAGCGGTTGATTTGAGCAACAATGGGATTGAAGGGCTTTTGCCTTCGTTCATGGGAATGATGCCGAAATTGACATCTTTGTCCCTAGAGAATAATAAATTTACGGGAATGATACCCACACAGTACGCATTGAAGACGGTATTTCCGGAAGAGGACGTGTCTGCGTTTGAGAGGCTATTGTTGGGAGGGAATTATCTGATTGGAGGGATACCGAGTCCTTTGTTGGTATTGAAAGAGGGTTCTGCTAATGTGAGGCTCGGTGATAATTGTTTGTATAGATGCCCTCTTAGAAAGAGGAAGAGAAGTGATAGATTTTGTGCTTGTGTTGTGTGTCTGACATATGAACGTTGGAAGCACGTGAGATTCCACGTTTGGAGGTCCTCAATCCTCATCTGGAACAATTCTCAGATGCTACTTAACCAACGGCTCTCACTCCCTCTCCTCTCAGTACCGTGA 1383 0.4599 MASLSTLFSLILVLSSSGVFYTAQSKTFWGDIQVLKQLKYALQNASVTPGSCLSSWDFTLDPCDNLFSEKFTCGFRCDVVVSGSSRLTELTLDQAGYAGSLASSSTWNLPYLETLDVSNNYFSGQIPESLSNLTRLRRLALSGNSFTGEIPSSIGSLSNLEELYLDNNNLEGPIPSSLNKLKRLKRLEIQINNLNGHIPTDLGSLTDLYYLDISDNAITGGIPASLPNSLVELSARNNSLSGFLTSESFRDLMYLQVLDLSYNKLTGSVPIVLFEIPSLEQLSLSFNELSSMEIPASSSSYNLGSESGLIAVDLSNNGIEGLLPSFMGMMPKLTSLSLENNKFTGMIPTQYALKTVFPEEDVSAFERLLLGGNYLIGGIPSPLLVLKEGSANVRLGDNCLYRCPLRKRKRSDRFCACVVCLTYERWKHVRFHVWRSSILIWNNSQMLLNQRLSLPLLSVP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1514 460 SUPERFAMILY L domain-like 81 386 - -
Sto11g1514 460 Pfam Leucine rich repeat 230 289 IPR001611 GO:0005515
Sto11g1514 460 Pfam Leucine rich repeat 86 145 IPR001611 GO:0005515
Sto11g1514 460 Pfam Leucine rich repeat 158 218 IPR001611 GO:0005515
Sto11g1514 460 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 3 406 - -
Sto11g1514 460 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 3 406 - -
Sto11g1514 460 Gene3D Ribonuclease Inhibitor 272 388 IPR032675 -
Sto11g1514 460 Gene3D Ribonuclease Inhibitor 201 271 IPR032675 -
Sto11g1514 460 PRINTS Leucine-rich repeat signature 255 268 - -
Sto11g1514 460 PRINTS Leucine-rich repeat signature 276 289 - -
Sto11g1514 460 SMART LRR_typ_2 109 133 IPR003591 -
Sto11g1514 460 SMART LRR_typ_2 276 300 IPR003591 -
Sto11g1514 460 SMART LRR_typ_2 330 353 IPR003591 -
Sto11g1514 460 SMART LRR_typ_2 157 181 IPR003591 -
Sto11g1514 460 SMART LRR_typ_2 205 233 IPR003591 -
Sto11g1514 460 Gene3D Ribonuclease Inhibitor 31 200 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1514 Sto-Chr11 14342464 14344021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1514 31 388 Receptor kinase-like Gene Family AT5G07280 35.294 7.09e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1514 - - adu:107478747 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3894 6 43212977 43214899 Sto11g1514 11 14342464 14344021 CCT
Sto11g1514 11 14342464 14344021 Sto11g1514 11 14342464 14344021 ECH