Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1840 ATGGCTGTGGAGGATGATGGATTGAAGACGCTCCAATACTTGTCGCTCATCTCCAAGGTCTGCACCGAGTTGGAGTTCCACTTCGGCACCGCCGACAAGTTCCTCGCCGAGTTCATCACCGAGTTAGGTCGAACCTCCCACAAGCTCGACGAATTCCACGCCAAACTGAAGGACAACGGTGCCGAGATGCCGGATCACCTTGTCCGAACGCTCTTCACTATTATTCACGCCATTCTTGTTCCCGACCCcaacaaaaaacacaaacacaGCGCCGACTTCAACGCTCTCGCCCTCGCACACGACAGAAACAATGGTTCCGGTGTATTGACTGTTTCGGAGCATCCAACTTATGATGAAGAGGAGGAGGACCTTGAGATTGAGATTGAGATTGAGTTGAATGAGGATGAACCTGCCTTCTTGCAAGGCCAAACcaaatactcaacggatacgTCTCCTGTTAAGATTTTTAAGAATCCAGAAGGCTCTCTGGGCCGCGCCGCCGCACTCCAGTCTGCACTGACAAAGGAGCGTAGGGAAGTGAAACGACAGCAACAACGCACAATGCTTGATTCAATTCCGAAGGATCTCAATCGCCCTTGGGAAGACCCTATGCCAGAGACAGGTGTTGGCCTATCCGCCTACGATACGCCGCAATGGAAGAAGGATGCCTATGGGAAAACCATTACCTTTGGGCAGAGGTCAAAGCTTTCTATTCAGGACCAGAGGCAGAGTTTGCCAATTTACAAGCTAAAAAAGGAGTTGATTCAGGCTGTGCATGACAATCAGGTGTTGGTAGTGATTGGAGAAACTGGTTCGGGGAAGACCACTCAGGTCACGCAGTATCTTGCTGAGGCGGGGTACACCACAAAGGGAAAAATTGGATGTACTCAACCCCGTAGGGTGGCTGCAATGTCGGTTGCAAAGAGGGTTGCAGAAGAGTTTGGTTGTCGCTTGGGAGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACCGGACCGGATACTGTAATTAAGTACATGACAGATGGTATGCTTCTTAGGGAAATATTGGTTGATGAGAATCTGTCACGGTATTCCGTTATAATGCTTGATGAAGCCCACGAAAGAACTCTTCATACTGATGTTCTTTTTGGACTGCTGAAGCAGCTAGTGAAGCGTAGGCCTGAATTGAGATTGATTGTCACGTCTGCTACTCTGGATGCTGAGAAATTTTCAGGATATTTCTTTGACTGTAAAATCTTTACAATTCCTGGTAGAACTTTTCCCGTGGAGATACTTTATGCTAAACAGCCTAAAAGTGATTACTTGGATGCGGCTTTAATCACTGTTCTGCAGATCCACTTGACAGAACCTGAAGGAGACATTCTTCTCTTCTTGACTGGTCAAGAAGAGATTGATTTTGCTTGCCAATCTCTCCACGAGAGAATGAAGGGATTAGGTCACAATGTTCCAGAGCTCATCATCTTACCGGTTTATAGTGCCCTTCCTAGTGAAATGCAATCTAGGATATTTGAACCTGCTCCTCCTGGGAAAAGGAAAGTGGTTGTGGCTACGAACATTGCTGAGGCTTCTTTGACTATTGATGGGATATTTTATGTAATCGATCCTGGATTCGCTAAGCAAAATGTATATAACCCAAAGCAAGATCTTGATTCTTTGGTGATAACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCGGGACGTGCAGGCCGTACTGGACCTGGGAAGTGTTATCGCCTCTATGCTGAGAGTGCATATAGGAATGAGATGTCTCCCACTACAATTCCAGAGATTCAAAGGATAAATCTCGGGATGACTACTCTTAATATGAAAGCTATGGGGATAAACGATCTACTGTCCTTTGATTTTATGGATTCACCATCACCCCAAGCATTTATTTCTGCCATGGAGCAGCTTTACAGTCTTGGAGCATTGGATGAAGAGGGTCTTTTAACCAAACTGGGGAGGAAAATGGCAGAATTTCCTTTGGATCCACCGTTGTCCAAGATGCTGCTCGCCAGTGTGGACCTTGGATGCAGTGATGAGATTTTGACCATAATTGCCATGATCCAAACCGGCAATATTTTTTACAGGCCTAGGGAAAAGCAAGCCCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCGGAGGGTGACCATCTTACACTACTTGCTGTTTATGAGGCATGGAAAGCTGAGAATTGTTCTGGGCCCTGGTGTTTTGAGAACTTTGTTCAATCCCAATCATTGCGAAGAGCACAGGATGTCAGGAAACAGCTTCTCACCATCATGGATAAGTATGATATCTATGCATTGGATGTTGTAAGTGCTGGAAATAACTCCACCAAAGTCAGGAAGGCTATCACTGCAGGATTCTTTTTCCATGCTGCTAGAAAGGACCCCCAGGAAGGTTACAGAACCCTAGTTGAGAACCAGCCTGTATATATTCATCCAAGTTCAGCTTTGTTCCAGAGACAGCCAGACTGGGTCATCTACCATGAGCTTGTGATGACGACTAAGGCATATATGCGTGAAGTCACTGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAGATTCTTCAAAGTGGCAGATCCTACAAAGATGAGCAAGAGAAAGTGTCAAGAGCGTATTGAACCATGA 2652 0.4544 MAVEDDGLKTLQYLSLISKVCTELEFHFGTADKFLAEFITELGRTSHKLDEFHAKLKDNGAEMPDHLVRTLFTIIHAILVPDPNKKHKHSADFNALALAHDRNNGSGVLTVSEHPTYDEEEEDLEIEIEIELNEDEPAFLQGQTKYSTDTSPVKIFKNPEGSLGRAAALQSALTKERREVKRQQQRTMLDSIPKDLNRPWEDPMPETGVGLSAYDTPQWKKDAYGKTITFGQRSKLSIQDQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSRYSVIMLDEAHERTLHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFDCKIFTIPGRTFPVEILYAKQPKSDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLHERMKGLGHNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQDLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYAESAYRNEMSPTTIPEIQRINLGMTTLNMKAMGINDLLSFDFMDSPSPQAFISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAENCSGPWCFENFVQSQSLRRAQDVRKQLLTIMDKYDIYALDVVSAGNNSTKVRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKAYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKCQERIEP 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1840 883 SMART ultradead3 243 427 IPR014001 -
Ssu9g1840 883 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 360 369 IPR002464 -
Ssu9g1840 883 Gene3D - 421 595 IPR027417 -
Ssu9g1840 883 SMART ha2_5 636 726 IPR007502 GO:0004386
Ssu9g1840 883 Coils Coil 166 186 - -
Ssu9g1840 883 Pfam Helicase conserved C-terminal domain 443 575 IPR001650 -
Ssu9g1840 883 Pfam Helicase associated domain (HA2) 637 725 IPR007502 GO:0004386
Ssu9g1840 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 768 IPR027417 -
Ssu9g1840 883 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 255 418 IPR014001 -
Ssu9g1840 883 SMART helicmild6 471 575 IPR001650 -
Ssu9g1840 883 Pfam DEAD/DEAH box helicase 251 401 IPR011545 GO:0003676|GO:0005524
Ssu9g1840 883 Gene3D - 215 420 IPR027417 -
Ssu9g1840 883 PANTHER ATP-DEPENDENT RNA HELICASE 104 883 - -
Ssu9g1840 883 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 786 861 IPR011709 -
Ssu9g1840 883 CDD SF2_C_RHA 422 583 - -
Ssu9g1840 883 CDD DEXHc_DHX8 240 418 IPR044762 GO:0000398|GO:0003724|GO:0005524
Ssu9g1840 883 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 436 616 IPR001650 -
Ssu9g1840 883 Gene3D - 620 719 - -
Ssu9g1840 883 PANTHER - 104 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1840 Ssu-Chr9 55776305 55778956 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1840 K12818 - gmx:100815173 1468.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2354 2 80929222 80933413 Ssu9g1840 9 55776305 55778956 PCT