Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1827 ATGGAAGGGCTGGCCATGCTGAAGCAGCTTATTGGTCAGCTTCAGCACCTCTTGGACTCTTACCACTCTCATTCTCAttcttcttctctcattctTCAACCTTCTCATCACACTCTCCTCTTTCAACAACACCCCAGATGGACCTCCCTTGACATTGAAGATAGCTCTGTAGATGACTTCTGTGGCCTTGTAATGACAGCTGGAAAGTCTGGCAGTTTCAGGATGTCAGAGCCTCTAAAGCCTCCACCTACTAAGAAGTCTCGAAGAGATAGAAGCAGGGGCAAATCATCTGGAAGATCCTGTACAACTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTAGAGGCGGTGATTGCACGACTTCCCATTGCTACATTTTTCTGCTTCCGCTCTGTCTGCCGGCAGTGGAATTCCATGCTGACTTCTCAAAGTTTTTCTCAGCACTGTACTCAAGTCCGACAAGAAAATCCATGGTTTTACACCATTACCCATGAAAATGTGAATTCAGGAGCCATGTACGACCCTTCTTTGAAAAAATGGCATCACCCAACTACATCAACACCACCCacaaaattgattgttttacCAGTGACTTCTGCTGGGGGTTTAGTTTGCTTTCTTGACATTGGTCATCGAAACTTCTTTGTTTGTAACCCACTGACTCAATCCTTCAAGGAGTTGCCATCTCGGTCAGTTAAGGTCTGGTCTCGTGTTGCTGTTGGGATGACAATAAATGGAAACTCAACTGGTTCAGGCTACCAGATCTTATGGGTGGGTTGTGATGGAGAATATGAAGTATATGACTCAGTCAGAAATTCTTGGAGTCGTCCAGGAAACATGCCTGCAAGTATGAAGCTACCATTGTCACTCAACTTTAGGTCTCAGGCTGTCTCTATTGACAGCACACTTTACTTCATGCGCTCAGATCCAGAAGGGATTGTTTCCTATGATATGGCAACTGGGGTTTGGAAACAACATATAATCCCAGCGCCATTGCATCTGACCGACCACACTCTGGCTGAGTGTGATGGCCAGATCATGCTTGTGGGCTTGCTCACAAAGAATGCAGCTACTTGTGTATGTATATGGGAGCTGCAGAAAATGACACTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCCTGAGATCAAAACAAATGAACCGATTGGTTACTTACAACATAGCAAGGAAAGAATGGCTGAAGGTTCCTGGTTGTGTGGTGCCACGAGGGAGAAAACGACAGTGGATAGCATGTGGTACTGCATTTCATCCATGCCTGACAGCGGTGGCATGA 1383 0.444 MEGLAMLKQLIGQLQHLLDSYHSHSHSSSLILQPSHHTLLFQQHPRWTSLDIEDSSVDDFCGLVMTAGKSGSFRMSEPLKPPPTKKSRRDRSRGKSSGRSCTTEVMEQEIWKDFPEDLLEAVIARLPIATFFCFRSVCRQWNSMLTSQSFSQHCTQVRQENPWFYTITHENVNSGAMYDPSLKKWHHPTTSTPPTKLIVLPVTSAGGLVCFLDIGHRNFFVCNPLTQSFKELPSRSVKVWSRVAVGMTINGNSTGSGYQILWVGCDGEYEVYDSVRNSWSRPGNMPASMKLPLSLNFRSQAVSIDSTLYFMRSDPEGIVSYDMATGVWKQHIIPAPLHLTDHTLAECDGQIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIARKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1827 460 Gene3D - 165 447 IPR015915 GO:0005515
Ssu9g1827 460 SUPERFAMILY Galactose oxidase, central domain 150 441 IPR011043 -
Ssu9g1827 460 Pfam F-box domain 111 150 IPR001810 GO:0005515
Ssu9g1827 460 SUPERFAMILY F-box domain 106 186 IPR036047 GO:0005515
Ssu9g1827 460 PANTHER F-BOX/KELCH-REPEAT PROTEIN 45 459 - -
Ssu9g1827 460 MobiDBLite consensus disorder prediction 72 101 - -
Ssu9g1827 460 Gene3D - 111 150 - -
Ssu9g1827 460 PANTHER BNAA07G08860D PROTEIN 45 459 - -
Ssu9g1827 460 SMART fbox_2 114 154 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1827 Ssu-Chr9 55651788 55655679 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1827 - - gmx:100810179 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1827 9 55651788 55655679 Ssu5g2336 5 65988093 65989415 PCT