Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2336 ATGCTGGTCTTTCGATGCATCTCTGTTCTACTACTTAATGGAATGAAGTATATGAATATCTGTGATCATCCTTTTCACAGATGGTCCTTCTTTGACATTGCTGATTACTCCGTAGATGACTTCTGTGGCCTCGTAATGGCAGCTGGAAAGTCTGGAAGTTTCAGGATGGTGGAGCCTCTAAAGCATCCATCTAAGAAGTCTCGAAGAGATAGGAGCAGGGGAAAATTATCTGGAAGGTCCTCCAGGGATGAAGCTATGGAACAacaaatttggaaaaatttgCCTGAAGATCTATTTGAGCCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGCTCTGTATGCCAGCGATGGAATTCCTTGCTAACTTCTCAAAGTTTTTCTCGGCATTGTGCTCAAGTCCCACAAGCAAACCCATGGTTTTACACCATAAGCCATGAACATGCAAATTCTGGAGCCATGTATGATCCTTCTATGAAGAAGTGGTACCATCCCACTATATCAACACTGCCTGCGGAGTTGATAGTTTTACCAGTGGCTTCTGCAGGGGGTCTAGTTTGCTTTCTTGACATTTATCATCAAAATTTCTATGTTTGTAACCCACTGAATCAATCCTTAAAGGAGTTACCAGCTCGGTCAGTTAAGGTCTGGTCTCGCGCTTCTGTAGGAATGACAGTAAATGGGAACTCAACTGGTGCTGGCTACAAGATCCTTTTGGTGGGTTGTGATGGAGAGTATGAAATTTATGACTCGGTAACAAAGTCTTGGAGCCATCCAGGGAACGTGCCTGCAGATATTAAGCTGCCGCTGTCACTCAATTATAGGTCACAAGCCGTTTCTAGTGACAGCACCCTGTACTTCATGCGTTCAGATCCTGAAGGAATTGTTTCCTATGATATGACAACGGGGGTTTGGACACAGTACATAATCCCAGCGCCATCGCATCCGACTGACCACACACTGGCTGAGTGTGATGGCCGGATATTGCTTGTGGGGTTGCTCACGAAGAATGCAGCGACATGTATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTATGGTGCTTGGACTTTTATGGGAAGCACGTTAGGATGACTTGCTTGGGAAACAAAGGCTTGCTTATGTTATCCTTGAGATCAAGACAAATGAATCGATTGGTTACTTACAACATAGCAAGTAGGGAATGGGTGAAGGTTCCTGCGTGTGTGGTGCCACATGGAAGAAAACGCCAATGGATAGCACACGGTACTGCATTTTATCCATGCCTCACTGCAATGGCTTGA 1323 0.4475 MLVFRCISVLLLNGMKYMNICDHPFHRWSFFDIADYSVDDFCGLVMAAGKSGSFRMVEPLKHPSKKSRRDRSRGKLSGRSSRDEAMEQQIWKNLPEDLFEPVIARLPIATFFRFRSVCQRWNSLLTSQSFSRHCAQVPQANPWFYTISHEHANSGAMYDPSMKKWYHPTISTLPAELIVLPVASAGGLVCFLDIYHQNFYVCNPLNQSLKELPARSVKVWSRASVGMTVNGNSTGAGYKILLVGCDGEYEIYDSVTKSWSHPGNVPADIKLPLSLNYRSQAVSSDSTLYFMRSDPEGIVSYDMTTGVWTQYIIPAPSHPTDHTLAECDGRILLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNIASREWVKVPACVVPHGRKRQWIAHGTAFYPCLTAMA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2336 440 Gene3D - 91 128 - -
Ssu5g2336 440 SUPERFAMILY Galactose oxidase, central domain 115 421 IPR011043 -
Ssu5g2336 440 SUPERFAMILY F-box domain 82 146 IPR036047 GO:0005515
Ssu5g2336 440 Gene3D - 129 431 IPR015915 GO:0005515
Ssu5g2336 440 SMART fbox_2 94 134 IPR001810 GO:0005515
Ssu5g2336 440 MobiDBLite consensus disorder prediction 59 84 - -
Ssu5g2336 440 Pfam F-box domain 91 130 IPR001810 GO:0005515
Ssu5g2336 440 ProSiteProfiles F-box domain profile. 88 133 IPR001810 GO:0005515
Ssu5g2336 440 PANTHER BNAA07G08860D PROTEIN 30 440 - -
Ssu5g2336 440 PANTHER F-BOX/KELCH-REPEAT PROTEIN 30 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2336 Ssu-Chr5 65988093 65989415 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2336 - - gmx:100775721 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1827 9 55651788 55655679 Ssu5g2336 5 65988093 65989415 PCT