Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1823 ATGAAGCAGCGGCAGCAGCAAAGTAGAGCCGAGTTGTTGGGCCTGGGCCTGGGCCTGTTTCTGCTGATCGCGGGTGGGTCAGTGAACACAGCGAATGGAGCGGATGATTTGGCGACGAAGTGTTCCCAGGTGGTTGACAAGGTGATTCCGTGTTTGGAGTTCGCGACGGGGAAGGAAGCGACGCCAAAAAAGGAATGTTGCGATGCAACTAAGGCGATGAAGGAGACGAACCCAGAGTGCTTGTGCTACATCATTCAAGAGACCCACAAGGGTAGCCCACAGATCAAAAGCTTGGGTATTCAAGAGGCCAAGCTGCTTCAGCTCCCTTCTGCTTGTAACGTTAAAAACGCCAGCATCAGCAACTGTCCTAAACTTCTGGGCTTATCTCCAAGTTCCCCCGATGCTGCTATCTTCACAAATTCTTCGAAGGTAACTCCTGCAGCTGCAAACACACAAACTACGACCACGCAGAGCCAGAACGCTTCGTATGGAAGTATGGTTAGGCCTAATACCGTGACCTATGTGATGATGATGGCTTTGGCCATTGTTGTCGTTGCAATTCCAACCGGATTTGTGAGCATTTATACATGA 591 0.5059 MKQRQQQSRAELLGLGLGLFLLIAGGSVNTANGADDLATKCSQVVDKVIPCLEFATGKEATPKKECCDATKAMKETNPECLCYIIQETHKGSPQIKSLGIQEAKLLQLPSACNVKNASISNCPKLLGLSPSSPDAAIFTNSSKVTPAAANTQTTTTQSQNASYGSMVRPNTVTYVMMMALAIVVVAIPTGFVSIYT 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1823 196 SMART aai_6 41 122 IPR016140 -
Ssu9g1823 196 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 39 122 IPR036312 -
Ssu9g1823 196 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 22 189 IPR043325 -
Ssu9g1823 196 Pfam Probable lipid transfer 32 122 IPR016140 -
Ssu9g1823 196 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 1 22 189 - -
Ssu9g1823 196 PRINTS Plant phospholipid transfer protein signature 40 56 IPR000528 GO:0006869|GO:0008289
Ssu9g1823 196 PRINTS Plant phospholipid transfer protein signature 99 116 IPR000528 GO:0006869|GO:0008289
Ssu9g1823 196 PRINTS Plant phospholipid transfer protein signature 61 75 IPR000528 GO:0006869|GO:0008289
Ssu9g1823 196 CDD AAI_LTSS 50 114 - -
Ssu9g1823 196 Gene3D - 38 119 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1823 Ssu-Chr9 55601771 55605406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1823 40 187 Acyl Lipid Metabolism Gene Families AT1G27950 45.946 1.79e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1823 - - gmx:100305718 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1823 9 55601771 55605406 Ssu5g2332 5 65937608 65940741 PCT