Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2332 ATGAAGCAACAGCagcaaaagaaaatgagagtagTTGTAGTAGGGTCCCTGTGGCTGTGGTCGTGCGTCTTTCTGCTGGCGGCGGGCGAGTCCCAGGGAGGAGCAGATTTGGAGGCGAAGTGCAGCCTACTGGTTCAGAAAGTGATTCCGTGTTTGAACTTTGCGACGGGGCAGGCGAAGGTTCCGACCAAGGATTGCTGCGACGCGACGTCGAAGATAAAGGGGAGCGATCCGGAGTGCCTGTGCTTCGTGATCCAGCAGACTCATAAGGGTAGCCCGGAGGTGAAAAGCATGGGGATTCAAGAGGGTAGGCTCCTTCAGCTCCCCACTGCTTGCAACTTGAAGAATGCCAGCACCACCAACTGTCCTAAGCTTCTGGGCCTATCTCCAAATTCCCCTGACGCTGCTATCTTCACGAATGCTTCGTTGAGAACCAATTCGACTTCAACGGTGGGAACTACAACACCGGTCTCGGAGAACCAGAAGGGCTCTTATGGAAACATGCTTAGACCTGCTCTCATGTCAGACCTAATAGCAGTGGTTGGGACCATTCTCCTCGTCGTGATTTCGATTGGTTCTGTCAACATTTACCCATGA 597 0.5159 MKQQQQKKMRVVVVGSLWLWSCVFLLAAGESQGGADLEAKCSLLVQKVIPCLNFATGQAKVPTKDCCDATSKIKGSDPECLCFVIQQTHKGSPEVKSMGIQEGRLLQLPTACNLKNASTTNCPKLLGLSPNSPDAAIFTNASLRTNSTSTVGTTTPVSENQKGSYGNMLRPALMSDLIAVVGTILLVVISIGSVNIYP 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2332 198 Pfam Probable lipid transfer 31 122 IPR016140 -
Ssu5g2332 198 Gene3D - 38 120 IPR036312 -
Ssu5g2332 198 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 1 14 189 - -
Ssu5g2332 198 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 14 189 IPR043325 -
Ssu5g2332 198 SMART aai_6 41 122 IPR016140 -
Ssu5g2332 198 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 40 122 IPR036312 -
Ssu5g2332 198 CDD AAI_LTSS 50 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2332 Ssu-Chr5 65937608 65940741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2332 40 163 Acyl Lipid Metabolism Gene Families AT1G27950 53.968 7.95e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2332 - - gmx:100799403 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1823 9 55601771 55605406 Ssu5g2332 5 65937608 65940741 PCT