Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1817 ATGAGAACGAGAAGAGGCCTTTCTTATCCTCCACTTCCGACCATGTCTTCCGACATCACCGTTTGCcggaaaagacaaaagaaatcgCCGGACAAAACCTCCGACTTCTTCGAGTCCTTGCCGGACGACCTTGTCCTCTCTGTCCTCTGCAAGCTCAGCTCCACCGCAACTTCACCCTCCGATTTCGTTAGCGTTTTAGTAACGTGCAAGAGACTAAACTCCTTAGGCCTTCACTCTCTGGTGTCATCAAAAGCATCCCACAAAACATTCCCAGTCAAACCCAAAAACTGGTGCGACTCCGCGCACCGTTTTCTCAAACACTGCGCCGATGCCGGAAACATTGAAGCCTGTTACACTCTCGGCATGATTCGGTTTTATTGTTTGCAAACCCGAGGGAGCGGCGCGTCGCTGATGGCGAAGGCGGCGATGAACTCTCACGCGCCGGCGCTGTACTCGCTCGCGGTGATTCAGTTCAACGGAAGCGGCGGCACGAAAAACGACAAGGACCTTCGCGCGGGAGTGGCGCTTTGCGCACGCGCGGCGTTCCTCGGTCACATCGACGCGCTGCGTGAGCTTGGCCATTGCTTGCAAGACGGTTACGGCGTTAAGCAGAACGTGACGGAGGGGCGGCGCTTTTTGGTGCAGGCCAACGCGCGCGAACTCGCCGCCGTGCTCTCCGCCGGGAATAGCAAGCGCCCCTGGCCGACGTGGAGCCTCCACCCGGTTCCGCACCCGCGGGTCCGGTCGGGGACCGGTTCGGGTTGCCCGCTGTTGAGCGATTATGGCTGCAACGTGCCGGCGCCGGAGGCTCATCCGGCGAGCAGGTTCATGGCGGAGTGGTTCGCCGGTCGGGGCGGGTCTTCGGGCCCGGGCATGAGGCTTTGCTCGCATTCGGGTTGCGGGCGACCCGAGACGAGGAAGCACGAGTTTCGGAGGTGTTCGGTTTGTGGCGCGGTGAATTATTGCTCACGCGCGTGCCAGGCGCTTGATTGGAAGTTCCGGCACAAGGCGGAATGTGCTCCCGTTGAGAGGTGGCTCGATGACGACGGCGAAGATGCCGCCGGCGAGGATGACGGTGCCGGCGTCCTGGACGGGGTAATGATGGTTAATAGTTAG 1116 0.595 MRTRRGLSYPPLPTMSSDITVCRKRQKKSPDKTSDFFESLPDDLVLSVLCKLSSTATSPSDFVSVLVTCKRLNSLGLHSLVSSKASHKTFPVKPKNWCDSAHRFLKHCADAGNIEACYTLGMIRFYCLQTRGSGASLMAKAAMNSHAPALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNVTEGRRFLVQANARELAAVLSAGNSKRPWPTWSLHPVPHPRVRSGTGSGCPLLSDYGCNVPAPEAHPASRFMAEWFAGRGGSSGPGMRLCSHSGCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKFRHKAECAPVERWLDDDGEDAAGEDDGAGVLDGVMMVNS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1817 371 Gene3D Tetratricopeptide repeat domain 85 231 IPR011990 GO:0005515
Ssu9g1817 371 SUPERFAMILY HCP-like 98 216 - -
Ssu9g1817 371 Pfam MYND finger 300 339 IPR002893 -
Ssu9g1817 371 Gene3D - 287 343 - -
Ssu9g1817 371 ProSiteProfiles Zinc finger MYND-type profile. 297 339 IPR002893 -
Ssu9g1817 371 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 20 371 - -
Ssu9g1817 371 SUPERFAMILY HIT/MYND zinc finger-like 294 344 - -
Ssu9g1817 371 SUPERFAMILY F-box domain 26 96 IPR036047 GO:0005515
Ssu9g1817 371 PANTHER MYND DOMAIN-CONTAINING 20 371 IPR044508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1817 Ssu-Chr9 55510737 55512061 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1817 - - gmx:100798136 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1817 9 55510737 55512061 Ssu5g2326 5 65809476 65810829 PCT