Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2326 ATGAGAACAAGGAGAAGGGCGTGTTATCCCGGAGTAGTGCCAAAGATGTGTTCCGATGTAAGGGTTGCAAAGAAAAACAAGGATCTGCACATGCATATGCATGTGCCGAGAGAGCCTATTATTCATAGCAGGAAAAGGCAGAAGAGAACACCTGAAAAAACCGCCGGCGATTGCGAATTTTTCGAGTCTTTGCCGGACGATCTCGTAATCTCTATCTTCTGCAAGCTTAGTTCCACCGCCAATTCCCCTTCCGATTTCGTCAATGTTTTAATCACGTGCAAAAGATTAAACAGATTAGCACTCCATTCGCTTGTACTATCCAAAGCCTCGCCGAGAACTTTCGCTATTAGAGCCAAAGACTGGTGCGATTCCGCACAGAGTTTCCTCAAACACTGTGCCGATGCGGGAAACGTTGAAGCCTGCTACACTTTAGGCATGATTCGGTTCTACTGTTTGCAAAACAGAGGGAGCGGCGCGTCGTTGATGGCGAAGGCCGCGATTAGCTCTCACGCGCGGGCTCTGTACTCGCTGGCGGTGATTCAGTTCAACGGCAGCGGCGGGACCAAGAGCGACAAGGACCTACGCGCCGGCGTGGCGCTTTGCGCGAGAGCGGCGTTTCTCGGCCACGTTGACGCGCTGCGCGAGCTCGGCCACTGCCTGCAGGACGGCTACGGCGTCCGGCAGAACATCGCGGAGGGGCGGCGGTTCCTCGTGCAGGCCAACGCGCGGGAGCTCGCCGCCGTGCTGTCCTCCGGCGCCGCCGCGCGGCACTGGCTGACGTGGAATCTCCAGCCACAGCTCCGGCAGGGGTACGGGTGTCCGCTGCTGAGCGATTTCGGGTGCAACGTGCCGGCGCCGGAGGTTCACCCGGCGAGCCGGTTCATGGCGGAGTGGTTTGCCGCGCGCGGCGGTTCGCCCGGTTCTGGACTCAGGCTCTGTTCGCACGCGGGGTGTGGGAGGCCGGAGACGAGGAAGCACGAGTTTCGACGGTGTTCGGTGTGTGGCGCGGTGAATTATTGCTCACGCGCGTGCCAGGCGCTTGATTGGAAGTTCCGGCACAAGAAGGAGTGCGCCCCCGTGGAGCGGTGGCTCGACGAGGAGGGCGAGGACGTCGGTGACGACGACGGTGACGCCGAGGTGGAGGTTATGGTGGATAGTTAG 1161 0.5952 MRTRRRACYPGVVPKMCSDVRVAKKNKDLHMHMHVPREPIIHSRKRQKRTPEKTAGDCEFFESLPDDLVISIFCKLSSTANSPSDFVNVLITCKRLNRLALHSLVLSKASPRTFAIRAKDWCDSAQSFLKHCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSGAAARHWLTWNLQPQLRQGYGCPLLSDFGCNVPAPEVHPASRFMAEWFAARGGSPGSGLRLCSHAGCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKFRHKKECAPVERWLDEEGEDVGDDDGDAEVEVMVDS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2326 386 SUPERFAMILY HCP-like 122 240 - -
Ssu5g2326 386 Gene3D - 308 361 - -
Ssu5g2326 386 Gene3D Tetratricopeptide repeat domain 115 302 IPR011990 GO:0005515
Ssu5g2326 386 SUPERFAMILY HIT/MYND zinc finger-like 312 362 - -
Ssu5g2326 386 ProSiteProfiles Zinc finger MYND-type profile. 315 357 IPR002893 -
Ssu5g2326 386 Pfam MYND finger 317 357 IPR002893 -
Ssu5g2326 386 PANTHER MYND DOMAIN-CONTAINING 42 384 IPR044508 -
Ssu5g2326 386 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 42 384 - -
Ssu5g2326 386 SUPERFAMILY F-box domain 48 117 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2326 Ssu-Chr5 65809476 65810829 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2326 - - gmx:100798174 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1817 9 55510737 55512061 Ssu5g2326 5 65809476 65810829 PCT