Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1805 ATGCCTGGTTTTGCTGTTGGAAAGAAGAGATTTATCCAGCCAAATATGTATTTCACCAATCTGATCAATCAAGATAAATCAACTCTTTCACAAAGCAATCATTGTTTATTCCCTGAGGTACTGAATAAAGATTATAGTAGCCCCATTCTTCCTGGGCTGCCTGATGATGTGGCAGAGTATTGTCTTGCACTTGTGCCTCGTTCCAATTTCCCTGCTATGGGTGGTGTCTGTAAGAGATGGAGGTCATTTATTCAAAGCAAAGAATTTGCTACTGTGCGAAAATTGGCTGGGATGCTTGAGGAATGGCTCTATTTCTTAACAACAGACTGTGAAGGAAAGGAAAGTTATTGGGACGTTATGGATTGTATCGGTCATAAATGCCGATCTCTTCCACCAATGCCTGGTCCAGGAAAGGCTGGGTTTGGAGTGGTGGTTCTTAATGGAAAGCTTCTTGTCATGGCTGGTTATTCAGCTATTGAAGGAACTGCCTTTGCCTCAGCAGAGGTTTACCAATATGATTCTTGCATCAACAGCTGGAGCAGATTGTCAAACATGAATGTGGCTCGTTATGACTTTGCTTGTGCTGAAGTCAATGGCTTGGTTTATGCTGTTGGAGGCTATGGGGAGGATGGTGACAGTCTTTCGAGTGCTGAGGTGTATGATCCAGATACTGACAAGTGGACACTGATAGAGAGCCTTCGTCGTCCAAGATGGGGTTGCTTTGCTTGTGGATTTGAGGGTAAGCTCTATGTCATGGGTGGAAGGTCAAGCTTTACTATTGGAAATTCCAAGtttgttgatatatataacCCTGAGAGGCACAGCTGGTGTGAGATTAAGAATGGCTGTGTTATGGTCACAGCTCATGCAGTATTAGGAAAGAAGTTGTTCTGCATAGAGTGGAAGAACCAACGGAAGCTAGCTATATTCAGTCCAGAGGACAATTCATGGAAAATGGTACCAGTCCCATTGACAGGGAGCTCAAGTGTTGGTTTTCGATTTGGGATACTGGATGGAAAGTTGCTGCTATTCCCAGTGGAGGCTGAACCTGCTTATCAAACATTGTTATATGATCCAAATGCAGCTCTGGGGTCAGAGTGGCAAACTTCTGACATAAGGCCGTCTGGTTTGTGCTTGTGTTGTGTAACAATCAAGGCATGA 1161 0.435 MPGFAVGKKRFIQPNMYFTNLINQDKSTLSQSNHCLFPEVLNKDYSSPILPGLPDDVAEYCLALVPRSNFPAMGGVCKRWRSFIQSKEFATVRKLAGMLEEWLYFLTTDCEGKESYWDVMDCIGHKCRSLPPMPGPGKAGFGVVVLNGKLLVMAGYSAIEGTAFASAEVYQYDSCINSWSRLSNMNVARYDFACAEVNGLVYAVGGYGEDGDSLSSAEVYDPDTDKWTLIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDIYNPERHSWCEIKNGCVMVTAHAVLGKKLFCIEWKNQRKLAIFSPEDNSWKMVPVPLTGSSSVGFRFGILDGKLLLFPVEAEPAYQTLLYDPNAALGSEWQTSDIRPSGLCLCCVTIKA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1805 386 Pfam Kelch motif 237 280 IPR011498 GO:0005515
Ssu9g1805 386 Pfam Kelch motif 139 186 IPR006652 GO:0005515
Ssu9g1805 386 Pfam Kelch motif 188 233 IPR006652 GO:0005515
Ssu9g1805 386 SUPERFAMILY Kelch motif 100 344 IPR015915 GO:0005515
Ssu9g1805 386 SUPERFAMILY F-box domain 47 90 IPR036047 GO:0005515
Ssu9g1805 386 Gene3D - 87 382 IPR015915 GO:0005515
Ssu9g1805 386 PANTHER KELCH REPEAT F-BOX PROTEIN 1 386 - -
Ssu9g1805 386 SMART fbox_2 53 93 IPR001810 GO:0005515
Ssu9g1805 386 Pfam F-box domain 52 89 IPR001810 GO:0005515
Ssu9g1805 386 SMART kelc_smart 248 294 IPR006652 GO:0005515
Ssu9g1805 386 SMART kelc_smart 149 199 IPR006652 GO:0005515
Ssu9g1805 386 SMART kelc_smart 200 247 IPR006652 GO:0005515
Ssu9g1805 386 PANTHER OS02G0202900 PROTEIN 1 386 IPR045887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1805 Ssu-Chr9 55367115 55368486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1805 53 231 Miscellaneous Gene Families AT4G33900 28.205 3.15e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1805 - - gmx:100802912 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1805 9 55367115 55368486 Ssu5g2311 5 65518435 65520260 PCT