Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2311 ATGCCTGCTTTTGTGGCTGAAAAGAAGAGATTCATAGAGCCAAATATGTGTTTTTCCAATTTGGCCAACCATGATAAACCAACCCTTACAAAAAGCAATCATTGTGTGAGCTCTGAGGCTctggatgatgatgatgatggtagtAGCCCCATCCTACCTGGGCTGCCTGATGATGTTTCAAAGTACTGCCTTGCACTCGTGCCTCGTTCTAACTTCCCAGCTATGGGTGGTGTCAGTAAGAGATGGAGGTGCTTTATTCGAAGCAAAGAATTTATGACCGTGCGAAAATTGGCTGGGGTGCATGAGGAATGGCTCTATATCTTAACAGCAGGTAGTGAAGGAAAAGGGAGCCACTGGGAGGTCATGGATTGTCTCGGTCATAATCACCGATCTCTTCCACCAATGCCTGGTCCAGCAAAGGCTGGCTTTGGGGTTGTGGTTCTTAATGGAAAGCTTCTTGTTATGGCTGGTTATTCTTCAATTGATGGAAATGCTTCTGTCTCAGCAGAGGTTTACCAATATGATTCTTGCCTCAACAGCTGGAGCAGATTGTCAAACATGAATGTGGCTCGGTATGACTTTGCTTGCGCTGAAGTCAACGGCTTGGTTTATGCTGTTGGAGGCTACGGCGCAAACGGCAACAGTCTCTCCAGTGCAGAGTTGTATGACCCGGATACTGACAAGTGGATGCCGATAGAGAGCCTCCGTCGTCCAAGATGGGGTTGCTTTGCCTGTGGATTTGAGGGGAAGCTCTATGTCATGGGTGGAAGGTCAAGCTTTACAATAGGAAATTCCAAGTGTGTTGATGTGTACAACCCCGAAAAGCACAACTGGTGTGAGATGAAAAATGGGTGTGTCATGGTCACTGCTCATGCAGTGCTGGGAAAGAAGCTGTTCTGTATGGAGTGGAAGAACCAGCGGAAGTTAGCAATATTCAATCCAGAGGACAATTCGTGGAAAATGGTACCAGTCCCTTTGACAGGTAGTTCAAGCATTGGTTTTCGGTTTGGGATACTGGATGGTAAGTTGTTGCTTTTCTCACTGGAGGAAGAGCCTTCATATAGGACTTTGTTGTATGATCCAAATGCAGCCCCAGGATCCGAGTGGCAGACTTCTGGTATAAGACCATCTGGTTTGTGCTTATGCAGTGTAACTATTAAGGCCTGA 1167 0.4567 MPAFVAEKKRFIEPNMCFSNLANHDKPTLTKSNHCVSSEALDDDDDGSSPILPGLPDDVSKYCLALVPRSNFPAMGGVSKRWRCFIRSKEFMTVRKLAGVHEEWLYILTAGSEGKGSHWEVMDCLGHNHRSLPPMPGPAKAGFGVVVLNGKLLVMAGYSSIDGNASVSAEVYQYDSCLNSWSRLSNMNVARYDFACAEVNGLVYAVGGYGANGNSLSSAELYDPDTDKWMPIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKCVDVYNPEKHNWCEMKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFNPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYRTLLYDPNAAPGSEWQTSGIRPSGLCLCSVTIKA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2311 388 PANTHER KELCH REPEAT F-BOX PROTEIN 1 388 - -
Ssu5g2311 388 SMART kelc_smart 202 249 IPR006652 GO:0005515
Ssu5g2311 388 SMART kelc_smart 250 295 IPR006652 GO:0005515
Ssu5g2311 388 SMART kelc_smart 151 201 IPR006652 GO:0005515
Ssu5g2311 388 PANTHER OS02G0202900 PROTEIN 1 388 IPR045887 -
Ssu5g2311 388 Pfam F-box domain 54 91 IPR001810 GO:0005515
Ssu5g2311 388 Gene3D - 89 384 IPR015915 GO:0005515
Ssu5g2311 388 SUPERFAMILY Kelch motif 102 349 IPR015915 GO:0005515
Ssu5g2311 388 Pfam Kelch motif 242 282 IPR006652 GO:0005515
Ssu5g2311 388 Pfam Kelch motif 141 188 IPR006652 GO:0005515
Ssu5g2311 388 Pfam Kelch motif 190 235 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2311 Ssu-Chr5 65518435 65520260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2311 55 229 Miscellaneous Gene Families AT4G33900 30.000 2.80e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2311 - - gmx:100815474 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1805 9 55367115 55368486 Ssu5g2311 5 65518435 65520260 PCT