Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1791 ATGCTCATACAGTCTCGGGCAATACGAGGGGCCCACGCGGTTATTGCCCCTCCTTCCCACCCCACACCACACGCTACACTCACTGCCTTCGTTACCATCGCCCTCTCATTAGCAACATTCATACTCTGCGGAGCTCCCAAAGCACTACTAATCGAACAACCGCAACCAAATTCGGTTTTAAAAACCGCAACAAACTTTCTCTCTTTCGTTCACACATACTCTCTGGCTTCTTCCATTTTCGCTTCTCGTAACGTTTTTGGAACAATCATGGCTTCCATTGCCGGATCCAATTGCGTCACTCTCCGAACCGCCAACTTCGGCGTCTCCGGTAACCGGAAAATGGGTCAGATACGGCAATGGTCTCCGGTTGCGACGAATCTCCGTTCCGCTTCCGGTCTTCGCTACCTATCGAATACTTCGTTTAGCTCCTCCGGTGTGAGAGCAAAGGTTGCTACTCTGGAGGAAGCGGTAACCGGAGCGACACAGAAAGTGGAAGCGCCGGTTGTTGTGGTAACCGGAGCTTCCAGAGGTATTGGCCGAGCGATTGCGCTGTCGTTAGGTAAAGCAGGTTGCAAGGTTCTGGTCAACTATGCAAGGTCATCAAAGGAAGCTGAAGAGGTTTCCAAGGAGGTAGAAATTTGCCGCATTGGTGGGCAAGCTCTTACATTTGGTGGAGATGTCTCTAATGAGGCTGACGTGGAGTCTATGATTAAAACTGCAGTTGATGCTTGGGGAACAGTTGATGTGTTAATAAACAATGCAGGAATAACTAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGGAGGTTATTGATATAAATCTCACTGGTGTTTTTCTTTGCACACAGGCTGCTGCTAAGGTtatgatgaagaaaaagaagGGAAGGATAGTCAATATTGCATCAGTTGTTGGTTTGGTTGGCAATGTTGGACAAGCCAATTATAGTGCAGCAAAAGCGGGAGTAATTGGCCTGACAAAAACTGTTGCAAAGGAATATGCTAGCAGAAACATCActGTTAATGCAGTTGCTCCTGGATTTATTGCATCTGACATGACTGCCAAGCTAGGACAAGACATTGAGAAAAAGGTTTTGGAGACAATCCCATTAGGAAGATACGGCCAACCAGAGGAAGTTGCTGGACTGGTGGAATTCTTGGCTCTTAATCAAGCTGCCAGTTACATCACTGGGCAGGTTTTTACCATTGATGGAGGTATGGTGATGTAA 1236 0.462 MLIQSRAIRGAHAVIAPPSHPTPHATLTAFVTIALSLATFILCGAPKALLIEQPQPNSVLKTATNFLSFVHTYSLASSIFASRNVFGTIMASIAGSNCVTLRTANFGVSGNRKMGQIRQWSPVATNLRSASGLRYLSNTSFSSSGVRAKVATLEEAVTGATQKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEEVSKEVEICRIGGQALTFGGDVSNEADVESMIKTAVDAWGTVDVLINNAGITRDGLLMRMKKSQWQEVIDINLTGVFLCTQAAAKVMMKKKKGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDIEKKVLETIPLGRYGQPEEVAGLVEFLALNQAASYITGQVFTIDGGMVM 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1791 411 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 305 333 IPR020904 GO:0016491
Ssu9g1791 411 CDD BKR_SDR_c 168 410 - -
Ssu9g1791 411 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 167 349 - -
Ssu9g1791 411 Pfam Enoyl-(Acyl carrier protein) reductase 173 409 - -
Ssu9g1791 411 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 116 411 - -
Ssu9g1791 411 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 116 411 - -
Ssu9g1791 411 Gene3D - 166 411 - -
Ssu9g1791 411 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 298 306 IPR002347 -
Ssu9g1791 411 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 245 256 IPR002347 -
Ssu9g1791 411 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 318 337 IPR002347 -
Ssu9g1791 411 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 169 410 IPR011284 GO:0004316|GO:0006633|GO:0051287
Ssu9g1791 411 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 411 IPR036291 -
Ssu9g1791 411 PRINTS Glucose/ribitol dehydrogenase family signature 168 185 IPR002347 -
Ssu9g1791 411 PRINTS Glucose/ribitol dehydrogenase family signature 318 337 IPR002347 -
Ssu9g1791 411 PRINTS Glucose/ribitol dehydrogenase family signature 245 256 IPR002347 -
Ssu9g1791 411 PRINTS Glucose/ribitol dehydrogenase family signature 339 356 IPR002347 -
Ssu9g1791 411 PRINTS Glucose/ribitol dehydrogenase family signature 292 308 IPR002347 -
Ssu9g1791 411 PRINTS Glucose/ribitol dehydrogenase family signature 372 392 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1791 Ssu-Chr9 55223776 55227682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1791 110 411 Acyl Lipid Metabolism Gene Families AT1G24360 67.881 1.57e-148 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1791 K00059 - gmx:100809809 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1791 9 55223776 55227682 Ssu5g2294 5 65258346 65260864 PCT