Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2294 ATGGGTTCTTTGGTCCTACCAAACTCACTCTTCTTCCGATCCAGAGGAACCGAACCTCCCCGGAAAGTAGGTAGTGAGGTTTTGGCTTTCCAGCGCTTCACATGGAATGGTTCATTTCCCTCTGTGCAGCTTGAAGCAAGCCAGAACCAGAACATGGAAGTGCCTGTTGTTGTGGTCACCGGAGCCTCCAGAGGCATTGGCCGTGCAATTGCACTTTCCTTCGGTAAAGCCGCTTGCAAGGTCCTGGTCAACTATGCCAGGTCATCCACGCAAGCTGAAGAGGTTTCCAACTTGATTGAGGCATTTGGTGGACAAGCTCTTACTTTTGGGGGAGATGTTTCAAATGAGGCTGATGTGGAGTCTATGATTAAAACTGCAGTGGATGCTTGGGGAACTGTTGATGTGTTGGTAAATAATGCAGGAATTACTCGGGATGGTTTGTTAATGAGAATGAAGAAATCACAATGGCTGGAGGTTATTGATCTGAATCTCACTGGAGTTTTTCTTTGCACACAGGCAGCAGCAAAGGTTATGACGATGAAAAAGAAGGGAAGGATAGTCAACATTGCATCAGTAATTGGTCAGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAGGCAGGAGTAATTGGCCTCACAAAAAGTGCTGCCAGGGAATATTCTAGCAGAAACATCactGTTAATGCAGTAGCCCCTGGGTTTATTGCATCTGATATGACAGCCCAGCTACGACCAGACATTGAGCAAAAAATATTGGAGTCAATCCCTTTAGGCAGATTTGGCCAACCAGAAGAAGTTGCTGGACTTGTGGAATTCTTGGCTCTTAATCCTGCTGCTAATTACATCACTGGGCagGTTTTCACCATCGATGGAGGTATGGCGATGTGA 894 0.4597 MGSLVLPNSLFFRSRGTEPPRKVGSEVLAFQRFTWNGSFPSVQLEASQNQNMEVPVVVVTGASRGIGRAIALSFGKAACKVLVNYARSSTQAEEVSNLIEAFGGQALTFGGDVSNEADVESMIKTAVDAWGTVDVLVNNAGITRDGLLMRMKKSQWLEVIDLNLTGVFLCTQAAAKVMTMKKKGRIVNIASVIGQVGNVGQANYSAAKAGVIGLTKSAAREYSSRNITVNAVAPGFIASDMTAQLRPDIEQKILESIPLGRFGQPEEVAGLVEFLALNPAANYITGQVFTIDGGMAM 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2294 297 PRINTS Glucose/ribitol dehydrogenase family signature 56 73 IPR002347 -
Ssu5g2294 297 PRINTS Glucose/ribitol dehydrogenase family signature 258 278 IPR002347 -
Ssu5g2294 297 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Ssu5g2294 297 PRINTS Glucose/ribitol dehydrogenase family signature 225 242 IPR002347 -
Ssu5g2294 297 PRINTS Glucose/ribitol dehydrogenase family signature 204 223 IPR002347 -
Ssu5g2294 297 PRINTS Glucose/ribitol dehydrogenase family signature 178 194 IPR002347 -
Ssu5g2294 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 184 192 IPR002347 -
Ssu5g2294 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Ssu5g2294 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 IPR002347 -
Ssu5g2294 297 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 191 219 IPR020904 GO:0016491
Ssu5g2294 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 56 296 IPR036291 -
Ssu5g2294 297 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 46 297 - -
Ssu5g2294 297 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 57 296 IPR011284 GO:0004316|GO:0006633|GO:0051287
Ssu5g2294 297 CDD BKR_SDR_c 56 295 - -
Ssu5g2294 297 Gene3D - 54 297 - -
Ssu5g2294 297 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 55 240 - -
Ssu5g2294 297 Pfam Enoyl-(Acyl carrier protein) reductase 61 295 - -
Ssu5g2294 297 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 46 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2294 Ssu-Chr5 65258346 65260864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2294 50 297 Acyl Lipid Metabolism Gene Families AT1G24360 72.177 4.11e-133 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2294 K00059 - gmx:100811718 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1791 9 55223776 55227682 Ssu5g2294 5 65258346 65260864 PCT