Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1787 ATGCCTCCCTCGTACTTGCCTCTTCGGTGGGAGAGCACGGGAGAGCAGTGGTGGTACGCGTCTCCCATCGATTGCGCCGCCGCGAACGGCCACTACGATCTGGTGGTGGAGCTTCTCCACCTCGACACCAACCTCCTCATCAAGCTCACTTCCCTCCGCAGAATTCGGCGCCTCGAAACCGTGTGGGACGACGAGGCGCACTTCGAGGACGTCGCCAAATGCCGCTCGCAGGTTGCCGGGAAGCTCATGTCGGAGTGCGAAACAAGAGGAGGACAAAACTCTCTCATCCGCGCCGGCTACGGCGGGTGGCTTCTCTACACCGCTGCCTCGGCCGGTGACGTGGACTTCGCTCGGGAACTGTTGGGGAGGTGCCCTGCGCTCGTGTTTGGAGAAGGAGAGTATGGAGTCACTGACATACTCTACGCTGCGGCGAGGAGCAACAATTCTGAGGTGTTCGAGTTTCTGCTTCGTTCTGCTCTCTCGCCGAGCGGTGGAAAGGAAATGGACGAGGCTTACGGGAGGGATATGATGAATAGGGCGGTTCATGCTGCCGCCAGAGGAGGGAACTGGGAGATGCTGAAACAGCTTGTTGGAGACGCTTCTGGCGTTTTGGGGTTTAGAGATGCTCAAGGATGCACTGTCTTGCATACTGCAGCTGGCAGAGGACAGGTTGAGGTGGTGAGAAATCTACTTGCATCATTTGATGTTGTAAACTTGACAGATGATCAAGGGAACACAGCCTTACATGGAGCTTCTTACGGGGGTCACTTACCTGTGGTGGAGATTCTGATTCTTTCATCCCCCTCACTGGCATTGTTAACCAATCACTATGGAGATACTTTTCTTCATATGGCTGTGGCTGGTTTCAGAAGTCCTGGTTTCCGTAGAATGGACAAGCATACTGAGCTCATGAAGCAATTGGTAAGGGAAAAGATTGTGACCTTACAGGACATTATCAATGTTAAGAACAATGATGGAAGAACGGCTCTCCATGTATCCGTGATTGATAATATTCAATGTGAGCTAGTGGAATTGTTGATGTCTGTGCCATCAATTGATTTGAACATTTGTGATGTTGATGGGATGACCCCTTTGGATCTTTTAAAACAAAGATCACGGTCAGCATCTTCTGATATTTTAATCAAGAGGATGATTTCTGCTGGAGGGATCTCTAACCGTCAGGATGCTGTCACAGGAAATACCCTTTGCACTCATCATAAAGCTCATGTCATTGGAGGCAGTCCTGGGACTTCATTTAGAATACCAGATGCAGAGATATTCCTGTACACGGGCATTGAGAATTCATCAGATGCCAATTATGATCAAGCGAGTGTGGAATCATATTCCTGCTCAAACGAACTAAGCAATTCTGACTCAGCCAATTCCCCACGTAACAAGAAGTCTAGTTCTGTCAATTATGCTGTAAGACGCTCAAAGTTTCGTCTCCCGTGGCCTAGAAGAGAGACAAAAGCAGCTGCCTCAGAAATTGAAGATGATGATTCTGTTGATCCTTTCAGTTCAAGTAGAAACTTGGAAGAGTTTCCAATCCCATTGCGGCAAAGATACTCACAGCCATGCTCTCTTCCAAACAACAAAAGAACACAATCTATGAGGACTTCTCTTCCAAGTCCATCCTCCAAAGTGAAATTCACTGCAGGCCTAATGCAAGGTGTGATTCAGCTAAAGCCACATCCTGCTCCTTCAACTCCTAGTCCTTTTCAAGAATTATCTGTGGCTACTCTTTCTTCCATCAAGAAACAAAAGGGTGCTGATATAATGGGACCCTCTTGCTCTAATCGATCAATAGATGACGGCACACTTCTATTGAACTACAAACAGTGTTCCTTCAATAAGAAGTTGATGAATgggtatttttcttttggagcACAAGACCCGGCTGTTGAAGATTCAGATAGCTGCGCAAAGTCAAACAGGAGTTACAAGCGTTTGAGTTCCTTAGTTGCCTAA 1968 0.4741 MPPSYLPLRWESTGEQWWYASPIDCAAANGHYDLVVELLHLDTNLLIKLTSLRRIRRLETVWDDEAHFEDVAKCRSQVAGKLMSECETRGGQNSLIRAGYGGWLLYTAASAGDVDFARELLGRCPALVFGEGEYGVTDILYAAARSNNSEVFEFLLRSALSPSGGKEMDEAYGRDMMNRAVHAAARGGNWEMLKQLVGDASGVLGFRDAQGCTVLHTAAGRGQVEVVRNLLASFDVVNLTDDQGNTALHGASYGGHLPVVEILILSSPSLALLTNHYGDTFLHMAVAGFRSPGFRRMDKHTELMKQLVREKIVTLQDIINVKNNDGRTALHVSVIDNIQCELVELLMSVPSIDLNICDVDGMTPLDLLKQRSRSASSDILIKRMISAGGISNRQDAVTGNTLCTHHKAHVIGGSPGTSFRIPDAEIFLYTGIENSSDANYDQASVESYSCSNELSNSDSANSPRNKKSSSVNYAVRRSKFRLPWPRRETKAAASEIEDDDSVDPFSSSRNLEEFPIPLRQRYSQPCSLPNNKRTQSMRTSLPSPSSKVKFTAGLMQGVIQLKPHPAPSTPSPFQELSVATLSSIKKQKGADIMGPSCSNRSIDDGTLLLNYKQCSFNKKLMNGYFSFGAQDPAVEDSDSCAKSNRSYKRLSSLVA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1787 655 SMART ANK_2a 134 164 IPR002110 GO:0005515
Ssu9g1787 655 SMART ANK_2a 210 239 IPR002110 GO:0005515
Ssu9g1787 655 SMART ANK_2a 100 129 IPR002110 GO:0005515
Ssu9g1787 655 SMART ANK_2a 243 272 IPR002110 GO:0005515
Ssu9g1787 655 SMART ANK_2a 325 356 IPR002110 GO:0005515
Ssu9g1787 655 SMART ANK_2a 18 47 IPR002110 GO:0005515
Ssu9g1787 655 SMART ANK_2a 176 206 IPR002110 GO:0005515
Ssu9g1787 655 SMART ANK_2a 277 317 IPR002110 GO:0005515
Ssu9g1787 655 SUPERFAMILY Ankyrin repeat 104 381 IPR036770 -
Ssu9g1787 655 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 1 651 - -
Ssu9g1787 655 Gene3D - 11 398 IPR036770 -
Ssu9g1787 655 ProSiteProfiles Ankyrin repeat profile. 243 275 IPR002110 GO:0005515
Ssu9g1787 655 MobiDBLite consensus disorder prediction 522 546 - -
Ssu9g1787 655 MobiDBLite consensus disorder prediction 486 510 - -
Ssu9g1787 655 ProSiteProfiles Ankyrin repeat profile. 210 242 IPR002110 GO:0005515
Ssu9g1787 655 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 651 - -
Ssu9g1787 655 MobiDBLite consensus disorder prediction 523 546 - -
Ssu9g1787 655 Pfam Ankyrin repeats (3 copies) 182 265 IPR002110 GO:0005515
Ssu9g1787 655 MobiDBLite consensus disorder prediction 451 472 - -
Ssu9g1787 655 MobiDBLite consensus disorder prediction 486 506 - -
Ssu9g1787 655 ProSiteProfiles Ankyrin repeat region circular profile. 243 264 - -
Ssu9g1787 655 ProSiteProfiles Ankyrin repeat region circular profile. 210 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1787 Ssu-Chr9 55208237 55211228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1787 105 367 Miscellaneous Gene Families AT2G31820 31.227 1.44e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1787 - - gmx:100782564 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1787 9 55208237 55211228 Ssu5g2290 5 65220239 65223004 PCT