Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2290 ATGCCTCCCTCTCAGTTCCCTCTTCGTTGGGAGAGCACAGGAGACAAATGGTGGTATGCATCTCCCATTGATTATGCTGCTGCAAATGGCCTCTATGATCTGGTCACTGAGCTTCTCCACCTTGACACCAACCTCCTCATTAAGCTCACTTCCCTTCGCCGAATTCGCCGCCTTGAAACCGTGTGGGACGATGAGTCCAAGTTTGAGGATGTTGCCAAGTGTCGAGCCAAGGTTGCGAGAAATCTTATGCTTGAGTGTGAGACAGGAAGAGGGCACAACTCTCTCATCCGTGCAGGCTATGGTGGGTGGCTCCTCTACACTGCTGCTTCAGCTGGAGATGTGGACTTTGTTCTTGAGTTGTTGGGGAGAGACCCTTTGTTGGTGTTTGGGGAAGGAGAGTATGGTGTCACTGACATGCTGTATGCTGCAGCCAGGGGGAAGAATTGTGAGGTCTTTAAGCTCTTGCTTCATTCTGCCCTCTCAAGAAAGGAGTGCCTTGTTGGCAGTGAAGCAGAATTGGAAGAGAAGTTGGATGAAGGTGCTAAGGTTTTCAAGAGGGATGTGGTGAACAGGGCCATTCATGCTGCTGCCAGAGGAGGGAATTGGGAAATACTGAAGCAGCTTCTTGCAGGTGTTTCTCGGATTTTGTCTTATAGAGATGCCCAAGGATGTACAGTCTTGCATGCAGCAGCTGCAAGAGGCCAGGTTGAGGTGGTGAGAAATCTAATTGTATCATATGATATCATCAACTCAACTGATGATAAAGGCAATACAGCATTACATGTTGCTTCTTACAGAGGTTACTTACCCGTGGTAGAGATTCTGATTGGAGCATCTCCCTCATTAACAACGTTAGCCAATCAGTATGGAGATACTTTTCTTCACATGGCAGTGGTTGGTTTCAGAAGCCCTGGTTTCTGTAGACTGGACAAGCACATTGAGCTCATGAAGCAATTGACAAGTGAAAAGATTGTAAACATGAAGGACATCATAAATGTCAGGAACAATGACGGAAGAACAGCTCTTCATGTTGCTGTGATTCATAATATCCAATGTGATGTAGTGGAATTATTGATGTCTGTTCCATCaattgatttgaacattcatgATGCTGATGGGATGACCCCTTTGGATCATCTTAGGCAAAGATCACGTTCCACATCTTCTGAAATTTTAATCAAGCAGTTAATTTCAGGTGGAGGGATCTCTAATTGTCAGGACTACGTTACAAGAAATGCCCTTGTTAATCATCTTAAGACTCATGGTATTGGAGGCAGTCCTGGAACATCATTTAGAATACCAGATGCTGAGATATTGTTATACACAGGCATTGAGAATTCATGTGATGCCAATTATGATCAGGCAAGTGTAGAATCAAATTCATGGTCAAGTGAAATAAACAATTATGACTCAGCCAATTCCCCATGTAACAGCAAGTCTAGTTCTGTCAATTATGGTGCTAGGCGCTTAAAGTTTCTGCTCCAGTGGCCTAGGAAAGCAGACACAAAAGAAGCAGCCTCAGAGTTGGAAGATGATGATTCTGTGAATTCTTTCAGTTCAAGGAACAACTTGGAAGATTTTCCAATCCCATTGAGGCAAAGATACTCAAAAATGTGTTCTCTTCCAAACAACAAAAGAACACTATCTATAAGGACTTATCTTCCAAGTCCATcagccaaaaaatattttactcaagGCCTAATGCAAGGCGTGATTAAGGTAAAGCCACAAGTGCCTCTTCCTGTTCATTCAACTTCTAGTCTTTTTCAAGAACTATCTATCTCTTCTCATTGTTCGAATAATAAGCAAACACGTGTTGATATAATGGGACCCTCTTGCTCCAATCGACCAATGGATGATGGTGGTACCCGAAAGATGAACTATAAGCAGGGCTCTTTCAATAAGACATTGATGAAccgatatttttcttttggagcACATGGCCAGGCTGTGGAAGATGCAAATAGCTGCACAATGTCAAATCACAGTTCTAAGCATTTTAGTTCTTTAGTTGCATAA 2019 0.42 MPPSQFPLRWESTGDKWWYASPIDYAAANGLYDLVTELLHLDTNLLIKLTSLRRIRRLETVWDDESKFEDVAKCRAKVARNLMLECETGRGHNSLIRAGYGGWLLYTAASAGDVDFVLELLGRDPLLVFGEGEYGVTDMLYAAARGKNCEVFKLLLHSALSRKECLVGSEAELEEKLDEGAKVFKRDVVNRAIHAAARGGNWEILKQLLAGVSRILSYRDAQGCTVLHAAAARGQVEVVRNLIVSYDIINSTDDKGNTALHVASYRGYLPVVEILIGASPSLTTLANQYGDTFLHMAVVGFRSPGFCRLDKHIELMKQLTSEKIVNMKDIINVRNNDGRTALHVAVIHNIQCDVVELLMSVPSIDLNIHDADGMTPLDHLRQRSRSTSSEILIKQLISGGGISNCQDYVTRNALVNHLKTHGIGGSPGTSFRIPDAEILLYTGIENSCDANYDQASVESNSWSSEINNYDSANSPCNSKSSSVNYGARRLKFLLQWPRKADTKEAASELEDDDSVNSFSSRNNLEDFPIPLRQRYSKMCSLPNNKRTLSIRTYLPSPSAKKYFTQGLMQGVIKVKPQVPLPVHSTSSLFQELSISSHCSNNKQTRVDIMGPSCSNRPMDDGGTRKMNYKQGSFNKTLMNRYFSFGAHGQAVEDANSCTMSNHSSKHFSSLVA 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2290 672 ProSiteProfiles Ankyrin repeat profile. 222 254 IPR002110 GO:0005515
Ssu5g2290 672 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 1 667 - -
Ssu5g2290 672 SMART ANK_2a 337 368 IPR002110 GO:0005515
Ssu5g2290 672 SMART ANK_2a 18 47 IPR002110 GO:0005515
Ssu5g2290 672 SMART ANK_2a 100 129 IPR002110 GO:0005515
Ssu5g2290 672 SMART ANK_2a 255 284 IPR002110 GO:0005515
Ssu5g2290 672 SMART ANK_2a 222 251 IPR002110 GO:0005515
Ssu5g2290 672 SMART ANK_2a 289 329 IPR002110 GO:0005515
Ssu5g2290 672 SMART ANK_2a 188 217 IPR002110 GO:0005515
Ssu5g2290 672 SMART ANK_2a 372 405 IPR002110 GO:0005515
Ssu5g2290 672 SMART ANK_2a 134 164 IPR002110 GO:0005515
Ssu5g2290 672 Gene3D - 12 417 IPR036770 -
Ssu5g2290 672 Pfam Ankyrin repeat 337 370 IPR002110 GO:0005515
Ssu5g2290 672 ProSiteProfiles Ankyrin repeat region circular profile. 255 276 - -
Ssu5g2290 672 Pfam Ankyrin repeats (3 copies) 193 282 IPR002110 GO:0005515
Ssu5g2290 672 ProSiteProfiles Ankyrin repeat region circular profile. 222 243 - -
Ssu5g2290 672 ProSiteProfiles Ankyrin repeat profile. 255 287 IPR002110 GO:0005515
Ssu5g2290 672 SUPERFAMILY Ankyrin repeat 104 393 IPR036770 -
Ssu5g2290 672 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2290 Ssu-Chr5 65220239 65223004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2290 105 378 Miscellaneous Gene Families AT2G31820 31.071 1.25e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2290 - - gmx:100791999 1207.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1787 9 55208237 55211228 Ssu5g2290 5 65220239 65223004 PCT