Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1767 ATGGAATGCTGTATACTCGCCAGGCTCAAAATCCAACCCCTATGGTTCGCCGCGCTCTTCGTTGTGGGATTACTGACAATTCTGAGATTGGTTTTCGGTGTTCTTAGATGGGTCTACGTCAGTTTCCTCAGGCCTCCGAAAAACCTCAGAAAGTACGGATCCTGGGCGCTGGTCACGGGACCCACCGACGGCATTGGAAAGAGCTTCGCCTTCGAGCTCGCTCGCAAGGGGTTAAACCTCGTCCTGGTCGGCCGGAACCCCGACAAGCTCAAGGACGTGTCGGATTCGATTGTTTCCAAGTTCGGAAAAACCGAGGTTAGGACCGTCGTGGTCGATTTCGCGGGGGATCTGGACGAGGGGGTGGCGAGGATTGGCGCGGCGATCGAGGGGTTGGACGTTGGGGTGCTGGTTAACAACGTGGGGGTGTCGTATCCTTACGCGAGGTTCTTCCACGAGGTGGACGAGGGGCTTCTCAACAATTTGATTAAAGTTAATGTCGTTGGAACCACTAAGGTGACTCAAGCTGTTCTGCCCGGGATGCTCAAGAGAAAGAAGGGGGCGATTGTTAACATTGGCTCTGGAGCTGCCATTGTGATACCTTCGGATCCCCTTTATGCTGTTTATGCCGCCACCAAATCGTACATCGATCAGTTTTCCAGATGTCTCTATGTTGAATACAAGAAGAGTGGGATTGACGTTCAGTGTCAGGTTCCGTTATATGTGGCAACTAAGATGGCATCAATCAAGAAATCTTCATTCTTTGTTCCATCAACCGATGGCTATGCCAAAGCAGGTGTGCGATGGATAGGCTATGAGCCTCGTTGCACACCATACTGGCCACACACTCTTCTTTGGGCCTTGGCATGCTCATTGCCTGAGTTTGTTGTTGATGCTTGGCGTCTGTGGTTTTGCTTGGGTATTCGAAAGAGGGGACAGCGCAAAGATACCACGAAGAAGGAATAA 963 0.514 MECCILARLKIQPLWFAALFVVGLLTILRLVFGVLRWVYVSFLRPPKNLRKYGSWALVTGPTDGIGKSFAFELARKGLNLVLVGRNPDKLKDVSDSIVSKFGKTEVRTVVVDFAGDLDEGVARIGAAIEGLDVGVLVNNVGVSYPYARFFHEVDEGLLNNLIKVNVVGTTKVTQAVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKSYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIKKSSFFVPSTDGYAKAGVRWIGYEPRCTPYWPHTLLWALACSLPEFVVDAWRLWFCLGIRKRGQRKDTTKKE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1767 320 PIRSF 11-beta-HSD1 4 314 - -
Ssu9g1767 320 Gene3D - 49 267 - -
Ssu9g1767 320 PANTHER RH59310P 5 319 - -
Ssu9g1767 320 PANTHER BETA-KETOACYL REDUCTASE 1-RELATED 5 319 - -
Ssu9g1767 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 52 312 IPR036291 -
Ssu9g1767 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
Ssu9g1767 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Ssu9g1767 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Ssu9g1767 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Ssu9g1767 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Ssu9g1767 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Ssu9g1767 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
Ssu9g1767 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Ssu9g1767 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Ssu9g1767 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1767 Ssu-Chr9 54978488 54980760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1767 1 320 Lipid Metabolism Gene Families AT1G67730 65.625 9.57e-166 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1767 K10251 - gmx:100814139 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1767 9 54978488 54980760 Ssu9g1767 9 54978488 54980760 ECH
Ssu5g2637 5 71265104 71278959 Ssu9g1767 9 54978488 54980760 PCT