Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2637 ATGGCTTCGTATGAACATGAAGGAAGGCCACTACCCAAGTTCGGGGAATGGGATGTGAATGATCCTGCCTCAGCTGAAGGATTCACTGTTATATTCAATAAGGCCAGAGATGAGAAAAAAACTGGCAGAGGAGGATCAGGGCGTGTTACATCACAGCGAAGAAATAATTCGCCCAAGGATGATGATAAATCCTGCAAGGTTAGCCcagaacaaaaattaaataatcttagACTGATGAAAGACCCCAGTCCAATCCAGATGTCtaagacaaaacaaaatacatacaAATTAAGCAGTGTTTATCTCGGAGCACTCATCATCTCATCCCTCGGTTTGATCGTCACACTCCACAGGCTCATCTGCCTCGCCACATGGATCTTCCACACGTGCTTCCGATCCGAGAGGAACCTCCTCCGAAGCTACGGTTCGTGGGCCCTGGTCACCGGCGCCACAGACGGCATCGGAAAAGCCTTCGCCGACCAGCTGGCACGGCGAGGACTAAACCTCGTTCTCGTGAGCAGAAGCTTCCAGAAGCTCGAAACCGTCGCGGGCGAAATCCGAGCGAAACACCCTGACACGCTCGTCAAGATCGTGGAGATGGACTTCGCCCGCGGCGACCTCTCGGAGGGTCTCCGGGGGCTGGAGGCGGCGACTGAGGGTTTGGATGTTGGCGTTTTGATCAACAACGTGGGGATCACGTATCCGAGGGCGATGTTCTTTCACGAGGTGGAGGAGAAGGTGTGGAGGAACATTGTGAGAGTGAACATCGAAGGGACCGCGAGAGTAACGAAAGCTGTTTTGCCTGGGATGTTAAGCATGAGAAAGGGTGCGATAGTTAACATTGGATCAGGTGCTGCCGTGGTTGTGCCTTCGCATCCTCTCTTTACCATCTATGCTGCTACAAAGGCTTTTGTAGATCAGTTATCAAGATCTCTATACGTGGAGTATGGACAATATGGGATACATGTGCAATGTCAGGTAGTACCACTGTACGTTGCAACGAATATGGTATCAAGGGTGGCATCTATTGAGAGGGATTCTTTGTTCATACCAACAGCTGAGGCTTATGCAAGAGCTGCAATTCGTGAAATTGGGTACAAACCAAGGTGCACACCTTATTGGGCTCACTCAATTCAGTGGTGTTTGACACGCTTAATCCCAGATCCACTACTTGATACTTGGCGCTTGTCCATTGGTATGCGCCGCAGGAATCAAAAGGGAGAATTAATTAAGGACTACGTTCATCACTATTATTAG 1257 0.4837 MASYEHEGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGRGGSGRVTSQRRNNSPKDDDKSCKVSPEQKLNNLRLMKDPSPIQMSKTKQNTYKLSSVYLGALIISSLGLIVTLHRLICLATWIFHTCFRSERNLLRSYGSWALVTGATDGIGKAFADQLARRGLNLVLVSRSFQKLETVAGEIRAKHPDTLVKIVEMDFARGDLSEGLRGLEAATEGLDVGVLINNVGITYPRAMFFHEVEEKVWRNIVRVNIEGTARVTKAVLPGMLSMRKGAIVNIGSGAAVVVPSHPLFTIYAATKAFVDQLSRSLYVEYGQYGIHVQCQVVPLYVATNMVSRVASIERDSLFIPTAEAYARAAIREIGYKPRCTPYWAHSIQWCLTRLIPDPLLDTWRLSIGMRRRNQKGELIKDYVHHYY 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2637 418 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 7 41 IPR008700 -
Ssu5g2637 418 PANTHER RH59310P 105 406 - -
Ssu5g2637 418 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 232 IPR002347 -
Ssu5g2637 418 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 298 317 IPR002347 -
Ssu5g2637 418 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 276 284 IPR002347 -
Ssu5g2637 418 Pfam short chain dehydrogenase 144 340 IPR002347 -
Ssu5g2637 418 PRINTS Glucose/ribitol dehydrogenase family signature 298 317 IPR002347 -
Ssu5g2637 418 PRINTS Glucose/ribitol dehydrogenase family signature 221 232 IPR002347 -
Ssu5g2637 418 PRINTS Glucose/ribitol dehydrogenase family signature 144 161 IPR002347 -
Ssu5g2637 418 PRINTS Glucose/ribitol dehydrogenase family signature 270 286 IPR002347 -
Ssu5g2637 418 Gene3D - 137 370 - -
Ssu5g2637 418 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 105 406 - -
Ssu5g2637 418 MobiDBLite consensus disorder prediction 1 21 - -
Ssu5g2637 418 CDD 17beta-HSD1_like_SDR_c 142 387 - -
Ssu5g2637 418 MobiDBLite consensus disorder prediction 35 67 - -
Ssu5g2637 418 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 139 397 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2637 Ssu-Chr5 71265104 71278959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2637 106 404 Lipid Metabolism Gene Families AT1G24470 57.807 4.79e-118 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2637 K10251 - cit:102621211 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2637 5 71265104 71278959 Ssu9g1767 9 54978488 54980760 PCT