Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1763 ATGGCAACGATGGCGATTATCAACTCTAAGTGCCTAAACACAACAGGGTCACCCAAGTTGCACAACCCGAAGCTCCCAGCTTCAAAACCCACCGTCTCCCTCCAGAGCCTGACAAAGGGCCTCGCCACCACTGAAAACGCCAACGCGTCGAGTTGCATGGCTGGCACCGCCCTCGCGGGGGCTATATTTTCGTCACTCGGAAACTGCGACGCAGCCTTGGCTGCGCAGCAAATAGCTGAAATAGCGGAAGGCGATAACCGTGGGCTAGCGCTGTTGTTGCCCTTGATTCCCGCCATAGCGTGGGTGCTGTTCAACATTTTGCAGCCTGCGCTGAACCAACTCAACCGCATGCGTAGCAGCAAGGGGGTCATCATTGGGCTTGGGCTTGGTGGGCTTGCAGCATCGGGCCTGGTGTCGGGCCCAGAAGCGTCGGCTAGTGAGATGGCTACGATTGCCGATGCTGCTGCCAGCGACAACAGGGGACAGCTTCTGCTGTTTGTGGTTACCCCGGCGATTCTTTGGGTTCTATACAACATTTTGCAACCCGCCCTCAACCAGCTCAACAGGATGAGATCCCAGTAA 582 0.567 MATMAIINSKCLNTTGSPKLHNPKLPASKPTVSLQSLTKGLATTENANASSCMAGTALAGAIFSSLGNCDAALAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPALNQLNRMRSSKGVIIGLGLGGLAASGLVSGPEASASEMATIADAAASDNRGQLLLFVVTPAILWVLYNILQPALNQLNRMRSQ 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1763 193 Pfam Photosystem II protein Y (PsbY) 85 117 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Ssu9g1763 193 Pfam Photosystem II protein Y (PsbY) 158 190 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Ssu9g1763 193 Hamap Photosystem II protein Y [psbY]. 85 119 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Ssu9g1763 193 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 193 IPR038760 GO:0009523
Ssu9g1763 193 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1763 Ssu-Chr9 54968302 54968883 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1763 K02723 - gmx:100814665 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1763 9 54968302 54968883 Ssu9g1763 9 54968302 54968883 ECH
Ssu5g2641 5 71319217 71319798 Ssu9g1763 9 54968302 54968883 PCT