Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2641 ATGGCAGCAACAATAGCAGCAATGGCCATGACCAACGCCAAATGCTTGAACACCCCGTCACCAAAGCTCCCCAACCCCCGCAAGCTCACACCATCAAAACCCACCTCCCTCCTTTCCCTTCACAACCTCCCAAGGGGCCTAACCTCACCCGAAAACACGAAACTATCCACCTCCGCGGCAATCGCGGGAGCCATCTTCTCGGGCCTCGGAACCTGCGACGCCGCTTTTGCCGCGCAACAAATAGCCGACATAGCGGAAGGCGACAACCGCGGCCTGGCGCTGTTGTTGCCCATAATCCCAGCCATAGCGTGGGTGCTGTTCAACATTCTGCAGCCAGCGCTTAACCAGCTGAACCGCATGCGCAGCACCAAAGGAGTGATCATTGGGTTGGGCCTCGGCGGGTTGGCAGGGTTGGTGGCAGCGCCGCATGCATCGGCTTCTGAAATTGCATCCATCGCTGAAGCCGCTAGTGACAACAGGGGACAGCTGCTGCTGTTCGTGGTTACACCGGCTATTGCTTGGGTGCTATTCAACATCTTGCAGCCTGCTCTGAACCAGATCAACAGGATGAGATCCCAGTGA 582 0.5756 MAATIAAMAMTNAKCLNTPSPKLPNPRKLTPSKPTSLLSLHNLPRGLTSPENTKLSTSAAIAGAIFSGLGTCDAAFAAQQIADIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQLNRMRSTKGVIIGLGLGGLAGLVAAPHASASEIASIAEAASDNRGQLLLFVVTPAIAWVLFNILQPALNQINRMRSQ 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2641 193 Hamap Photosystem II protein Y [psbY]. 88 122 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Ssu5g2641 193 Pfam Photosystem II protein Y (PsbY) 88 120 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Ssu5g2641 193 Pfam Photosystem II protein Y (PsbY) 158 190 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Ssu5g2641 193 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 193 IPR038760 GO:0009523
Ssu5g2641 193 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2641 Ssu-Chr5 71319217 71319798 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2641 K02723 - gmx:100779397 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2641 5 71319217 71319798 Ssu9g1763 9 54968302 54968883 PCT