Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1639 ATGGAGCCTGTCAAGACCATTCTCAACAATGCCAAATACTCCTCCATCTTCTTCGCCATCTTTGTTCTCTTAGCTTCAGCATTGTCTTCAGCAAATGCCAAAATTCACGAGCACGAGTTTGTTGTTCAAGCAACTCCAGTGAAGAGGCTGTGCAAAACCCACAACACCATCACCGTGAATGGGCAATACCCGGGCCCAACGTTGGAAATCAACAATGGAGACACTTTGGTCGTCAAAGTCACCAACAAAGCTCGTTACAATGTGACCATTCATTGGCACGGTGTTAGGCAAATGAGAACAGGATGGGCAGATGGACCAGAATTTGTGACTCAGTGCCCCATTCGTCCTGGAGGAAGTTACACATACCGTTTTACTGTTCAAGGACAAGAAGGCACACTTTGGTGGCACGCTCATAGCTCATGGTTAAGGGCCACCGTTTACGGTGCCTTAATCATTCGCCCTAGGGAAAGAGAACCCTACCCTTTTCCCAAGCCAAAGCACGAGACTCCCATTCTTCTTGGGGAATGGTGGGACGCAAACCCCATCGATGTTGTGAGGCAGGCCACACGAACAGGGGCAGCCCCAAACGTGTCTGATGCATACACTATCAATGGTCAACCTGGTGACCTTTACAAGTGCTCTAGCAAAGACACTACAATTGTCACAATACATGCCGGCGAGACCAACCTTTTACGTGTCATCAATGCTGCACTTAATCAACCTCTCTTCTTCACTATTGCAAACCACAAACTCACAGTGGTTGGCGCTGACGCCTCCTACCTCAAACCCTTCACCACCAAAGTCCTCATGCTTGGACCTGGTCAAACCACCGATGTCCTAATCACCGCTGACCAGCCACCTTCCCGCTACTACATGGCGGCGCGTGCATACCAATCTGCCCAAAATGCCGCGTTTGACAACACCACTACCACTGCCATTCTCCAATACCAATCACCCCACCACAATAACCATTCTCACCATTCCAAAGGAATTAAGAAGGCCAAACCTGTTATGCCACCACTCCCCGCATACAATGACACAAACACTGTCACTGCCTTTAGCAGAAGCTTCAAGAGCCCCAGAAAAGCTGAAGTCCCTATTGAAATCGATGAGAGCCTCTTCTTCATTGTGGGCTTAGGACTAAACAAATGCCCTAAAAATTTTCGAGCAAGGAGGTGCCAGGGACCCAATGGGACGAGGTTCACTGCGAGCATAAACAACGTGTCCTTTGTGCTCCCCAACAATGTGTCCATCTTACAGGCTCACTACCTCGGAATCCCCGAAGTGTTCACCACCGACTTTCCAGCGAAGCCGCCAGTGAAGTTCGATTACACTGGCAACGTGAGCCGTTCGCTGTGGCAACCTGTTCCCGGGACTAAGGCGCATAAGTTGAAGTTTGGATCGAGGGTGCAAATTGTGTTGCAGGATACTAGCATTGTTACTCCTGAGAACCACCCAATTCATCTTCATGGGTATGATTTCTACATTGTTGCAGAAGGGTTTGGAAATTTCGATGCCAAGAAAGATACGAAGAAATTCAACCTTGTTGATCCACCTTTAAGGAACACAGTGGCTGTGCCTGTGAATGGATGGGCAGTTATTCGATTTGTTGCTGATAACCcagGTGCTTGGCTTATGCATTGTCACTTGGACGTTCACATTGGGTGGGGTTTGGCCACGGTGTTGTTGGTGGAGAACGGAGTCGGGAAATTGCAATCCATAGAGCCTCCTCCAGTGGATTTGCCTCTTTGTTag 1755 0.4866 MEPVKTILNNAKYSSIFFAIFVLLASALSSANAKIHEHEFVVQATPVKRLCKTHNTITVNGQYPGPTLEINNGDTLVVKVTNKARYNVTIHWHGVRQMRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIRPREREPYPFPKPKHETPILLGEWWDANPIDVVRQATRTGAAPNVSDAYTINGQPGDLYKCSSKDTTIVTIHAGETNLLRVINAALNQPLFFTIANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLITADQPPSRYYMAARAYQSAQNAAFDNTTTTAILQYQSPHHNNHSHHSKGIKKAKPVMPPLPAYNDTNTVTAFSRSFKSPRKAEVPIEIDESLFFIVGLGLNKCPKNFRARRCQGPNGTRFTASINNVSFVLPNNVSILQAHYLGIPEVFTTDFPAKPPVKFDYTGNVSRSLWQPVPGTKAHKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDAKKDTKKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLMHCHLDVHIGWGLATVLLVENGVGKLQSIEPPPVDLPLC 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1639 584 CDD CuRO_3_LCC_plant 429 567 IPR034289 GO:0005507
Ssu9g1639 584 SUPERFAMILY Cupredoxins 32 181 IPR008972 -
Ssu9g1639 584 SUPERFAMILY Cupredoxins 162 359 IPR008972 -
Ssu9g1639 584 Pfam Multicopper oxidase 42 156 IPR011707 GO:0005507
Ssu9g1639 584 ProSitePatterns Multicopper oxidases signature 2. 547 558 IPR002355 GO:0005507
Ssu9g1639 584 CDD CuRO_1_LCC_plant 38 154 IPR034288 GO:0005507
Ssu9g1639 584 Pfam Multicopper oxidase 168 318 IPR001117 -
Ssu9g1639 584 SUPERFAMILY Cupredoxins 395 584 IPR008972 -
Ssu9g1639 584 Gene3D - 164 362 IPR008972 -
Ssu9g1639 584 Gene3D - 20 154 IPR008972 -
Ssu9g1639 584 ProSitePatterns Multicopper oxidases signature 1. 542 562 IPR033138 -
Ssu9g1639 584 CDD CuRO_2_LCC_plant 170 316 IPR034285 -
Ssu9g1639 584 Gene3D - 383 584 IPR008972 -
Ssu9g1639 584 TIGRFAM laccase: laccase 33 584 IPR017761 GO:0046274|GO:0048046|GO:0052716
Ssu9g1639 584 PANTHER LACCASE 11 584 - -
Ssu9g1639 584 Pfam Multicopper oxidase 434 566 IPR011706 GO:0005507|GO:0016491
Ssu9g1639 584 PANTHER MULTI-COPPER OXIDASE 11 584 IPR045087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1639 Ssu-Chr9 53118847 53122746 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1639 K05909 - gmx:547704 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1639 9 53118847 53122746 Ssu6g3081 6 70313394 70316819 PCT