Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3081 ATGGAAGCTCTCAAGACCATCTTCTTAGTCCTTTTTGTTCTCTTAGCTTCAGCATTGTATTCAGCCAATGCCAAAATTCAGGAGCACGAGTTTGTTATTCAAGCAACGCCAGTGACGAGGCTGTGCAACACCCACAGCACCATCACAGTGAATGGACAATTCCCAGGCCCAACATTGGAAGTCAACAATGGAGACACTTTGGTCGTCAAAGTCACTAACAAAGCTCGTTACAATGTGACCATTCACTGGCACGGTATTCGGCAAATGAGAACTGGATGGGCTGATGGACCAGAATTTGTGACTCAATGTCCCATTCGTCCTGGAGAAAGTTACACCTATCGTTTTACCATTCAAGGACAAGAAGGCACACTTTGGTGGCACGCTCATAGCGCATGGCTGAGAGCCACTGTTTATGGTGCTTTAATCATTCACCCCAAGGAAGGAGAGGCATATCCTTTCCCTAAGCCAAAGCGCGAGACACCAATTCTTCTAGgGGAATGGTGGGACGCAGACCCTATGGATGTTTTGAGACAAGCCCAACAAACAGGAGCAGCTCCAAATATATCTGATGCATACACTATCAATGGTCAACCTGGCGATCTTTACAAGTGTTCTACCCAAGGCACCACCATCGTTCCAATAGATTCTGGCGAGACCAATCTCCTCCGAGTCATCAATGCTGCACTCAACCAACCCCTGTTCTTCACAGTCGCCAACCACAAACTCAGAGTGGTTGGTGCCGACGCTGCATACCTTAAACCCTTCACCACCAACGTCATCATGCTGGGACCAGGCCAAACTACCGATGTTCTCATCCAAGGCGACCAACCACCCTCACGGTACTACATGGCCGCACGCGCCTACCAATCCGCACAAAACGCCCCCTTCgacaacaccaccaccaccgccattCTCGAATACAAATCAGCCCCGTGTCCCGCAAAGGGCGCATCAATCAAACCCGTTATGCCTTCTCTCCCAGCTTACAACGACACCAACACAGTCACCGCCTTCAACGGAAATTTCCGAAGCCCCGGAAAGGTTGAAGTCCCTACGGAAATCGATGACAACCTATTCTTCACCATTGGCCTGGGACTCAACAATTGCCCTCCAAACTTCAGCGCAAACCAATGCCAGGGACCGAACGGGACGCGCTTCACTGCCAGCATGAACAACGTCTCGTTTGTTCTCCCCAGCAACGTGTCCATCTTGCAGGCTCATCAGCTTGGGGTGCAAGGAGTGTTCACCACTGATTTTCCTACACAACCTCCTGTGCAGTTTGATTATACCGGTAACGTGAGTCGTTCGTTGTGGCAACCTGTTCCGGGGACGAAAGTGACCAAATTGAAGTTTGGGTCGAGGGTGCAGATTGTGTTGCAGGATACTAGCATTGTGACCCCCGAGAACCACCCGATTCACCTTCATGGGTATGATTTCTACATCGTGGCAGAGGGGTTTGGAAATTTTGACCCCAAGAGAGACACTTCTAAGTTCAACCTTGTTGATCCACCTATGAGAAACACCGTGGGAGTACCCGTGAATGGATGGGCAGTTATCAGATTTGTTGCTGACAACCCAGGAGCTTGGATTATGCATTGTCACTTGGATGTTCACATCGGGTGGGGTTTGGCGACTGTGTTCTTGGTGGACAATGGAGTAGGTCTGTTGCAATCCATAGAGCCCCCTCCAGAGGACCTGCCTCTATGTTAG 1710 0.4924 MEALKTIFLVLFVLLASALYSANAKIQEHEFVIQATPVTRLCNTHSTITVNGQFPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGIRQMRTGWADGPEFVTQCPIRPGESYTYRFTIQGQEGTLWWHAHSAWLRATVYGALIIHPKEGEAYPFPKPKRETPILLGEWWDADPMDVLRQAQQTGAAPNISDAYTINGQPGDLYKCSTQGTTIVPIDSGETNLLRVINAALNQPLFFTVANHKLRVVGADAAYLKPFTTNVIMLGPGQTTDVLIQGDQPPSRYYMAARAYQSAQNAPFDNTTTTAILEYKSAPCPAKGASIKPVMPSLPAYNDTNTVTAFNGNFRSPGKVEVPTEIDDNLFFTIGLGLNNCPPNFSANQCQGPNGTRFTASMNNVSFVLPSNVSILQAHQLGVQGVFTTDFPTQPPVQFDYTGNVSRSLWQPVPGTKVTKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKRDTSKFNLVDPPMRNTVGVPVNGWAVIRFVADNPGAWIMHCHLDVHIGWGLATVFLVDNGVGLLQSIEPPPEDLPLC 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3081 569 CDD CuRO_2_LCC_plant 161 307 IPR034285 -
Ssu6g3081 569 ProSitePatterns Multicopper oxidases signature 2. 532 543 IPR002355 GO:0005507
Ssu6g3081 569 PANTHER MULTI-COPPER OXIDASE 5 569 IPR045087 -
Ssu6g3081 569 TIGRFAM laccase: laccase 24 569 IPR017761 GO:0046274|GO:0048046|GO:0052716
Ssu6g3081 569 PANTHER LACCASE 5 569 - -
Ssu6g3081 569 Gene3D - 372 569 IPR008972 -
Ssu6g3081 569 SUPERFAMILY Cupredoxins 351 569 IPR008972 -
Ssu6g3081 569 Gene3D - 155 346 IPR008972 -
Ssu6g3081 569 Gene3D - 27 154 IPR008972 -
Ssu6g3081 569 Pfam Multicopper oxidase 33 147 IPR011707 GO:0005507
Ssu6g3081 569 ProSitePatterns Multicopper oxidases signature 1. 527 547 IPR033138 -
Ssu6g3081 569 SUPERFAMILY Cupredoxins 153 346 IPR008972 -
Ssu6g3081 569 Pfam Multicopper oxidase 159 309 IPR001117 -
Ssu6g3081 569 CDD CuRO_1_LCC_plant 29 145 IPR034288 GO:0005507
Ssu6g3081 569 Pfam Multicopper oxidase 419 551 IPR011706 GO:0005507|GO:0016491
Ssu6g3081 569 CDD CuRO_3_LCC_plant 414 552 IPR034289 GO:0005507
Ssu6g3081 569 SUPERFAMILY Cupredoxins 23 173 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3081 Ssu-Chr6 70313394 70316819 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3081 K05909 - gmx:100796956 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3081 6 70313394 70316819 Ssu6g3081 6 70313394 70316819 ECH
Ssu9g1639 9 53118847 53122746 Ssu6g3081 6 70313394 70316819 PCT