Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1602 ATGCCAACGCCCGTGGCAGCCGCGAGGCAATGCCTAACCGCCGAGGCGGCGCGCGCGCTGGACGAGGCGGTGTCCGTCGCGAGGCGGCGCGGCCACGCCCAGACGACGTCGCTCCACGCCGTCTCCGCCCTGCTCTCCCTCCCGTCGTCTCCCGTCCTCCGCGACGCGTGCTCCCGCGCCCGCAACTGCGCCTACTCGCCGCGCCTCCAGTTCAAGGCGCTCGACCTCTGCCTCTCGGTGTCGCTCGACCGCGCGCCGTCGTCGCACAACCACCTCTCCGGCGACCACGAGCCTCCCGTCTCCAACTCCCTCATGGCCGCCATCAAACGCTCCCAGGCCAACCAGCGCCGCCACCCCGATAACTTCCACCTCTACCACCCCCAGACGCTCtctcaacaacaacagcaacagcaATCATTTTCTGTTTCTTCCGTTAAGGTCGAGCTTCAGCATTTGATTCTGTCGATCCTCGATGACCCGGTTGTGAGTCGGGTTTTCGCCGAGGCGGGTTTTCGGAGCTCCGACATCAAGCTCGCCATCCTCCGGCCTCTCCGCCCCCGCGGCCCGCCGATTTTTCTCTGCAATTTGTCCGAGCCGCCGCGCCGGTTTCCGTTCTTCTTCGGCGACGATGACGGTGGCGGCGAGAACTTCCGGCGGATCGGGGAGGTTCTGGTTCGCAGCCGGGGGAGGAATCCGCTGCTTCTCGGCGCGTGTGCGGGCGACGCTTTGAGCCGGTTCGCGGAGGCCGTGGAGAAGCGAAGGGAGGGGGTTCTGCCGGTGGAGCTCTCCGGGCTGCGCGTGGTTTGCATTGGGGAGGAGGTCGCCAGTGGGGACGCGGAGGTTGTGGGGAGGCGCGTTAGGGAGATTGGGAGCCTGGCGGAGCAGTGTGTGGGGCCCGGTGTTGTGGTGAGTTTCGGGGATTTGAAGGGTTTTGTGAGCAGCGATGAGGGGAGTGAGGGTTTGAGGAGTGTGGTGGGGGAACTGGCGAAGTTGTTGCGGGTTCATTATGATAAGTTTTGGTTGATGGGTGCTGCTGCGAGCTATGAGAGTTACTTGAAATTTGTGGGAAAGTTTCCTTCTGTGGAGAAGGATTGGGACTTGCAGCTTCTGCCTATTACCTCTGTTAGGCCCTCTGAATCGTATCAGCGCCCCAGGTCCAGCTTAATGGATTCATTTGTTCCATTTGGTGGCTTTTTTTCGTCACAGTCTGCTTTGAAAGGTCCACTAAATGGCTCGTTTTATGGTGTTCCCCACTGTCATCAGTGTGGTGAAAGGTGTGAACATGAAGTCCGTGCTGCTTCGAAGGAAAGGTTTTCTGCTTCAGCTGCTGATCCGAATCAGTCTAACTTGCCTCCGTGGTTGCAGATTGCAGAATTTGGCACAGCAAAAGGATTGAATGTTAAGACCAAAGATAATGGTGTTTTGGTCGAGAGTAGTGAACCTGGGCCACTGCATAAGAACTTAGACAAGATATGCCAGCATCTGCACCAACGAGATGCAAATACTTTTCCAACTGTTGTGGGGTTTCATTGTGCTGCTGACCAGAAAAAGGAAGATGCTGACGATTGCAGCAGCAAAATTACAGACAAATCACCTAGTGAATACATCAATCTCAATTCCCATGTACCCGCTGGCGTGCAAATGATGCCTGCGTCACAATCAAGTAGTCCTTTTCCTGCAGTTTTCAAGGCAAAGCAGGAGAAATATACTTCAAAACTTGCTGAGATGTTCCAGAAAGTGGAAGAGCATGAGTCAGGTGACCTAAGATCATGCAACATGTCCAATTCAAGTGTGTGTGATGGTAGTCAAATGTCTCCCACATCTGTAACTTCTGTAACCACAGATCTTGGGTTAGGAATATGCTCTTCTCCTACCAGCAATAAACTGAAGAAACCTACTGTTCAATGTTCAATGGAGCCTCCAAAGGAAATCCCAAGTCTATTTGCTTCAAACTTTAATTTGGCTAATGGGAATATGTTGAAGCATCCATCCCAGTCTTCATCCTGCTTAAGTTTTGACTATTGTGGACAAGTTGATGCAAGAAATCCCAAAATTCTTTTTGAAGCTCTTTCCAAGGAGGTAAGCTGGCAAGATGAAGCCTTACGGGCTATCATCAAAACAATAGTTTGCAGCCCAACAAAAAGGGTTAAACACCGTGGAGCAAATCAGCCTGGGGACATCTGGATGAATTTTGTGGGACCTGATAGActtggtaaaaagaaaattgctgTTTCTGTAGCCGAGTTATTGTATGGGAGCCGGGAAAGCTTTATTTTTGTGGACCTAAGTTCTGAAGAAATGAAAGGATGCGATGTGAAATTCAGAGGGAAGACAACCCTTGATTTTATTGTAGGGGAGTGTTGCAAGAAACCCTTCTCTGTGGTTTTCCTTGAAAATGTAGACGAGGCAGATATTCTAGCTCAAAGTAGTTTGTCTCAAGCCATCAAGACAGGAAAAATTACAGACTCACATGGACGAGAAGTTAGTGTAAACAatacaatatttgttttttctttctcagATTACCAAAATAGTTCGATGCCAACAGGTGAACCTTCCAACTATTCTGAGGAAAGAATACTGAGGGCAAAGGGGGGAGGTATAAGGATAAAAGTTGAACATGTGATTGGAGACATCAGAAGCCAAAGCATCAGCGTAACTAACAATTCAATAGATGCCATTCCTAATCTAAATTTCCTAAACAAACGTAAGTTGATTGGTGACAATGAATTTCATGATCCACATTTACTCTCTGATACAGTTAAAAGGGCACATACAACATCAAATTGGCTGTTAGATTTGAATCTCCCAGCCGAAGAGAATGAACAGAAACAAACAAACGATGGAAACTCTGAACATGTCCCAACTGAGAACCAAAGCCTTTGGTTGCAAGATTTGTGTGATCTGGTTGATGAAACAGTTGTTTTTAAACCTTATGATTTTGATGCACTTGCGGATAGAATGTTGAGAGTGATCAGAAGTAACTTCAACAAAATTCTTGGATCCGAGTGTGCATTACAGATCCAGACAGAAGTCATGGACCAATTGCTTGCAGCTCAATATGTCTCAGACAGGGATGCGGAGGTGGAGAACTGGGTGGAGGAAGTTCTATGCGGAGGATTTGTAGAAATACAGAGAAGGTACAACCTCACTGCTAGTTCTATTGTAAAACTTGCTACGTGTCCAGAGCAAGCTACTGGTGTACACCTTCCCCCAGGGATAATTGTAGACTGA 3234 0.4864 MPTPVAAARQCLTAEAARALDEAVSVARRRGHAQTTSLHAVSALLSLPSSPVLRDACSRARNCAYSPRLQFKALDLCLSVSLDRAPSSHNHLSGDHEPPVSNSLMAAIKRSQANQRRHPDNFHLYHPQTLSQQQQQQQSFSVSSVKVELQHLILSILDDPVVSRVFAEAGFRSSDIKLAILRPLRPRGPPIFLCNLSEPPRRFPFFFGDDDGGGENFRRIGEVLVRSRGRNPLLLGACAGDALSRFAEAVEKRREGVLPVELSGLRVVCIGEEVASGDAEVVGRRVREIGSLAEQCVGPGVVVSFGDLKGFVSSDEGSEGLRSVVGELAKLLRVHYDKFWLMGAAASYESYLKFVGKFPSVEKDWDLQLLPITSVRPSESYQRPRSSLMDSFVPFGGFFSSQSALKGPLNGSFYGVPHCHQCGERCEHEVRAASKERFSASAADPNQSNLPPWLQIAEFGTAKGLNVKTKDNGVLVESSEPGPLHKNLDKICQHLHQRDANTFPTVVGFHCAADQKKEDADDCSSKITDKSPSEYINLNSHVPAGVQMMPASQSSSPFPAVFKAKQEKYTSKLAEMFQKVEEHESGDLRSCNMSNSSVCDGSQMSPTSVTSVTTDLGLGICSSPTSNKLKKPTVQCSMEPPKEIPSLFASNFNLANGNMLKHPSQSSSCLSFDYCGQVDARNPKILFEALSKEVSWQDEALRAIIKTIVCSPTKRVKHRGANQPGDIWMNFVGPDRLGKKKIAVSVAELLYGSRESFIFVDLSSEEMKGCDVKFRGKTTLDFIVGECCKKPFSVVFLENVDEADILAQSSLSQAIKTGKITDSHGREVSVNNTIFVFSFSDYQNSSMPTGEPSNYSEERILRAKGGGIRIKVEHVIGDIRSQSISVTNNSIDAIPNLNFLNKRKLIGDNEFHDPHLLSDTVKRAHTTSNWLLDLNLPAEENEQKQTNDGNSEHVPTENQSLWLQDLCDLVDETVVFKPYDFDALADRMLRVIRSNFNKILGSECALQIQTEVMDQLLAAQYVSDRDAEVENWVEEVLCGGFVEIQRRYNLTASSIVKLATCPEQATGVHLPPGIIVD 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1602 1077 Gene3D - 668 874 IPR027417 -
Ssu9g1602 1077 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1074 - -
Ssu9g1602 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 686 1011 IPR027417 -
Ssu9g1602 1077 Pfam Clp amino terminal domain, pathogenicity island component 147 181 IPR004176 -
Ssu9g1602 1077 PANTHER PROTEIN SMAX1-LIKE 8 1 1074 - -
Ssu9g1602 1077 ProSiteProfiles Clp repeat (R) domain profile. 8 189 IPR004176 -
Ssu9g1602 1077 Gene3D - 10 183 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1602 Ssu-Chr9 52589104 52594032 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1602 - - gmx:100800606 1847.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1602 9 52589104 52594032 Ssu6g3042 6 69660086 69661758 PCT