Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3042 ATGCACAGAATGACAAGATATGCCAGTGTCTGCATAAAAAATTCCCTGATGCAAAAAACTGTTCAACAGTTACGGGGTTCCAATGTTCTGACAGCAAAAGGAAGGATGCTAACAACCCCAGCAACAAACTTACACGCACATCATCAAGTGAATACATCAATATCAACTCAGAAGTGCTTGTTGGATTTCAATGCAAAGCAGGAGAAATATACTTCAGAACTTTCTGAGAAGTTCCAGAGAGTGGAAGGTCTCGAGTTAGGTGATCTAGTATCATGCAACATGTCCACTTCAATTGTATGTGATGGAAGCCAGATGTCTCCCACATCTGTGATTTCTGTTACCACAGATCTGGGCTTAGGAATGTGCTCCTCTCCTACCAGCAATAAATCTAAGAAACCTTCCAGTCAATATACACTGGAGCCTCCGAAGCAAATCTCaagtttattttcttcaaaaatgaaTCCCAAAATTCTTTTTGATGCCCTTACCAAGGAGGTTAGCTGGCAAGATGAAGCCTCAAGTGTTATCTGCAAAACAATAGCTGGCAGCCATACAAATAGGGTTGGAGCAAATCAACGGGCTGATGTATGGATGAATTTTGTGGGACCTGATAGGaatggtaaaaagaaaattgctgTTTCTCTGGCTAAGTTTTTGTATGGAAGCCGGGATAGCTTTATTTTTGTGGATCTAAGTTCTGAAGAAATGAAAGGATGCAATGTGAAATTCAGAGGGAAGACTACTCTTGATTTTATTGTAGGTGAGTATTGCAAGAAACCCTTCTCTGTGGTCTTCCTTGAAAATGTAGACAAGGCTGATGTGTTAGTTCAAAATAGTTTGTCCCAAGCCATCAAGACTGGAAAGCTTACTAACTCACACGGAAGAGCAGTGGGTGTAAAAAATGCAATATTTGTGACTTCTTTCTGTGGTCACCAAGCAAGGGAACCTTCCAACTATTCTGAGGAAAGAATATTGAAGGTAAAAGGAAGGCCTATCAAAATAACAGTTGAACATGTGAGTGGAGACATCAGAAGCCAAAGCGTTAGTGTAGCTGATGGTTCAATAGATAACATTCCCAATCCagttttagtaaataaaagaaagttcaTTGGCCATAATGAATTTCATGATCAGCACTTAACCTCAGACACGGCTAAAAGAGCACATACAACATCAAATTGGCATTTAGATTTGAATCTTCCAGCCGAAGAGAATGAACTTCCACAAATGAATGATGGGAACTCGGAACATGCCTCAACTGAGAACCAAAACCTTTGGTTGCAAGATTTGTATGACCAGGTTGATgaaacaattgtttttaaacCTTATAATTTTGATGCACTTGCGGATAGAGTATTGAAAGTGATCACAAATAGCTTCCACAAAACTATTGGATCAGAGTGTACCTTACAGATAGAGTCAGAAGTAATGGACCAATTGCTTGCAGCTGCATATGTCTCAGACGGAGATAAGGACATAGAGAATTGGGTGGAAGAAGTTCTTAGTGTAGGATTTACAGAAGTACAGAGAAGGTACAACCTTACTGCTTGTTCAATTGTGAAACTTGCTACATGTTCACATCAAGCATCAAGTGTATACCTTCTTCCAAGTATAACAATGGATTAA 1626 0.3807 MHRMTRYASVCIKNSLMQKTVQQLRGSNVLTAKGRMLTTPATNLHAHHQVNTSISTQKCLLDFNAKQEKYTSELSEKFQRVEGLELGDLVSCNMSTSIVCDGSQMSPTSVISVTTDLGLGMCSSPTSNKSKKPSSQYTLEPPKQISSLFSSKMNPKILFDALTKEVSWQDEASSVICKTIAGSHTNRVGANQRADVWMNFVGPDRNGKKKIAVSLAKFLYGSRDSFIFVDLSSEEMKGCNVKFRGKTTLDFIVGEYCKKPFSVVFLENVDKADVLVQNSLSQAIKTGKLTNSHGRAVGVKNAIFVTSFCGHQAREPSNYSEERILKVKGRPIKITVEHVSGDIRSQSVSVADGSIDNIPNPVLVNKRKFIGHNEFHDQHLTSDTAKRAHTTSNWHLDLNLPAEENELPQMNDGNSEHASTENQNLWLQDLYDQVDETIVFKPYNFDALADRVLKVITNSFHKTIGSECTLQIESEVMDQLLAAAYVSDGDKDIENWVEEVLSVGFTEVQRRYNLTACSIVKLATCSHQASSVYLLPSITMD 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3042 541 PANTHER PROTEIN SMAX1-LIKE 8 58 536 - -
Ssu6g3042 541 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 58 536 - -
Ssu6g3042 541 Pfam AAA domain (Cdc48 subfamily) 198 308 IPR003959 GO:0005524|GO:0016887
Ssu6g3042 541 Gene3D - 131 345 IPR027417 -
Ssu6g3042 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 306 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3042 Ssu-Chr6 69660086 69661758 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3042 - - pvu:PHAVU_008G223600g 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1602 9 52589104 52594032 Ssu6g3042 6 69660086 69661758 PCT