Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1523 ATGAATGGCGAGGGGAATGAAGCAATGCAAGTGGAGAAGGAGAGGTTGGTGTACATGTGGGGATACCTGCCGGGGGCGCTGCTGCAGAGGACGCCGCTGTTGACGCCTATCCTCGTTAGGGTTCCGCCGTCCGGTTATTCTTGGAGGGATGTTTGCGGTGGTGGTTGTGGATTCGCCATGGCTATCTCTGAGCCTGGAAAGCTCATAACATGGGGTTCAACAGATGATTTAGGCCAAAGCTATGTTACATCTGGCAAACACGGGGAAACTCCAGAACCTTTCCCTCTTCCTACTGAAGTGACTATTGTAAAAGCTGCAGCTGGATGGGCACATTGTGTTTCTGTGACTGATTGTGGAGAAGTTTACACATGGGGATGGAGGGAATGTGTTCCCTCTGGGAAGGTGTTTGGTGAATCATTAACTGGGGTAAGCCCCGAAAAGGATGTACCGGGAAGGCAAAGTTCATTTTTGATGGAGCAAGTGAGCCCTCGTTCTCAAGGCTCAAAATCTACTGGAGGAACTGCCTCTAGTACCAGTGGAGAAGAAAGTACAAAGAGAAGAAGAGTATCTTCAGCAAAGCAAACAGCTGAAACCTCATCATCTAGTGATGATACTCTGACAGCATTGCCGTGTCTTGTTACACTAAACCCAGGCGTAAGGATAGCAAGTGTTGCTGCTGGTGGTCGCCATACCTTGGCATTGTCAGATACAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCTAGAATACGAATGGTGTCCTCTCCTCATCTAGTTCCTTGTATTAATTCCTCTTCTTATGGTAAAGATATATCGGCGTCACTGGCTCGAGGAAGCATGAGTTCAGATGGGCAAAATTTCAGAGTTCCTGGAAGTTATATAAAGGGAATTGCCTGTGGAGGTCGACACAGTGCAGTAATCACAGATGCTGGAGCTGTGCTTATGTTTGGCTGGGGACTTTATGGACAGTGTGGGCAAGGAAGTACAGATGATGAACTGAGCCCGACTTGTGTATCTTCCTTATTGGGTATTCGAATAGAGGGAGTCGCTGCAGGACTGTGGCATACTGTGTGTACATCTGCTGATGGTGATGTATATGCATTTGGTGGAAACCAGTTTGGGCAGCTGGGAACTGGTGCTGATCAAGCTGAGACTATACCAAGGCTACTGGATTGTCCAAGCTTggaaaatgtaaatgtaaagaaaatatCTTGTGGGGCTCGTCACAGTGCTCTAATAACAGATAATGGAAAAGTCTTCAGCTGGGGATGGAACAAGTATGGACAGCTGGGCCTTGGGGACGTGATTGATCGTAACATTCCTTCTGAAGTTACCATCGAAGGTTGTGTAGCTAAAAACGTTGCATGTGGCTGGTGGCATACTCTTCTTCTGGCCGAGTCACCCACTTGA 1431 0.4766 MNGEGNEAMQVEKERLVYMWGYLPGALLQRTPLLTPILVRVPPSGYSWRDVCGGGCGFAMAISEPGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEVTIVKAAAGWAHCVSVTDCGEVYTWGWRECVPSGKVFGESLTGVSPEKDVPGRQSSFLMEQVSPRSQGSKSTGGTASSTSGEESTKRRRVSSAKQTAETSSSSDDTLTALPCLVTLNPGVRIASVAAGGRHTLALSDTGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINSSSYGKDISASLARGSMSSDGQNFRVPGSYIKGIACGGRHSAVITDAGAVLMFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAETIPRLLDCPSLENVNVKKISCGARHSALITDNGKVFSWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKNVACGWWHTLLLAESPT 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1523 476 MobiDBLite consensus disorder prediction 158 180 - -
Ssu9g1523 476 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 410 420 IPR000408 -
Ssu9g1523 476 Gene3D - 194 282 IPR009091 -
Ssu9g1523 476 Pfam Regulator of chromosome condensation (RCC1) repeat 221 250 - -
Ssu9g1523 476 PRINTS Chromosome condensation regulator RCC1 signature 224 240 IPR000408 -
Ssu9g1523 476 PRINTS Chromosome condensation regulator RCC1 signature 102 115 IPR000408 -
Ssu9g1523 476 PRINTS Chromosome condensation regulator RCC1 signature 419 440 IPR000408 -
Ssu9g1523 476 PRINTS Chromosome condensation regulator RCC1 signature 359 377 IPR000408 -
Ssu9g1523 476 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 224 234 IPR000408 -
Ssu9g1523 476 Gene3D - 8 141 IPR009091 -
Ssu9g1523 476 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 10 476 - -
Ssu9g1523 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 66 118 IPR000408 -
Ssu9g1523 476 SUPERFAMILY RCC1/BLIP-II 17 474 IPR009091 -
Ssu9g1523 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Ssu9g1523 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 423 IPR000408 -
Ssu9g1523 476 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 304 314 IPR000408 -
Ssu9g1523 476 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 10 476 - -
Ssu9g1523 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 424 474 IPR000408 -
Ssu9g1523 476 MobiDBLite consensus disorder prediction 158 204 - -
Ssu9g1523 476 Gene3D - 283 475 IPR009091 -
Ssu9g1523 476 Pfam Regulator of chromosome condensation (RCC1) repeat 318 365 IPR000408 -
Ssu9g1523 476 Pfam Regulator of chromosome condensation (RCC1) repeat 369 420 IPR000408 -
Ssu9g1523 476 Pfam Regulator of chromosome condensation (RCC1) repeat 423 471 IPR000408 -
Ssu9g1523 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 238 317 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1523 Ssu-Chr9 51053307 51059055 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1523 - - gmx:100778841 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1523 9 51053307 51059055 Ssu6g2957 6 67989492 67991097 PCT