Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2957 ATGCTTATGCTCATTATactttattcatttcattttgttttggtcAAGTGTGGGCAAGGAACTACCGATGATGAACTAAGCCCGACTTGTGTGTCTTCCTTATTGGGTATCCACATAGAGGGAGTTGCTGCAGGACTGTGGCATACAGTCTGTACATCTGCTGATGGTGATGTGTATGCATTTGGTGGGAATCAGTTTGGGCAGCTGGGAACTGGTGCTGATCAAGCTCAGACTCTACCAAGATTAGTGGATTCTCCAAGTTTGGAAAATATGCATGCAAAGAACATATCTTGTGGTGCTCGTCACACTGCTTTAGTAACAGAGGGTGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAGCTGGGCCTTGGGGACGTGATTGACCGTAACATTCCTTCTGAAGTCACCATTGAAGGTTGTGTCCCTAAAAATGTTGCTTGTGGTTGGTGGCATACTCTTCTTCTGGCCGAGTCCCCCACTTGA 489 0.4397 MLMLIILYSFHFVLVKCGQGTTDDELSPTCVSSLLGIHIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAQTLPRLVDSPSLENMHAKNISCGARHTALVTEGGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVPKNVACGWWHTLLLAESPT 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2957 162 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 96 106 IPR000408 -
Ssu6g2957 162 Pfam Regulator of chromosome condensation (RCC1) repeat 55 105 IPR000408 -
Ssu6g2957 162 Pfam Regulator of chromosome condensation (RCC1) repeat 110 157 IPR000408 -
Ssu6g2957 162 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 56 109 IPR000408 -
Ssu6g2957 162 PRINTS Chromosome condensation regulator RCC1 signature 58 74 IPR000408 -
Ssu6g2957 162 PRINTS Chromosome condensation regulator RCC1 signature 147 162 IPR000408 -
Ssu6g2957 162 PRINTS Chromosome condensation regulator RCC1 signature 110 126 IPR000408 -
Ssu6g2957 162 PRINTS Chromosome condensation regulator RCC1 signature 39 52 IPR000408 -
Ssu6g2957 162 Gene3D - 9 162 IPR009091 -
Ssu6g2957 162 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 162 - -
Ssu6g2957 162 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 110 160 IPR000408 -
Ssu6g2957 162 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 15 162 - -
Ssu6g2957 162 SUPERFAMILY RCC1/BLIP-II 17 158 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2957 Ssu-Chr6 67989492 67991097 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2957 - - gmx:100807837 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1523 9 51053307 51059055 Ssu6g2957 6 67989492 67991097 PCT