Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1484 ATGTCTGTTACTTATGTTGTTCACCATTTGCAGAGGTTGTCGAGTCGCAGGAACACACACAACCAAAGCCACAGCTTCTTCTTCTGTCTCACCAACACAATGCCTTTCATCTCCAAAATTCAGCGCCAATTCGATTACACCCTCTTCGGTTCCGCCACTCCCATCGTCATCGACAATGGCGCCTCCTATTTCCGTATTGGATGGGCAGGAGAGACTCAACCCCGTGTTGTTTTCCGCAACATTGTCCAGAGGCCACGCCACAAAGCCACTGGAGAAACTGTCACTATTGTTGGCGACCATGATCCAGCATTAATGAAATACTTTGACTGTACTCGCTCTGGACCCCGCTCAGCATTTGACAGCAATGTTGTTTATCAGTTTGAAATAATGGAATATATTCTGGACTTTGGATTTGACCGTTTGGGAGCAACAGGATCAGAGATTGATCATCCTGTCCTGATCACAGAATGTGTATGCAACCCAGTTCAGTCTCGTAGTAAAATGGGAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGTGTTGATGCAGCATTCAgctataaatataatcaacaacAAGGTGTTTGTGATAAAGATGGTCTTGCTATGTGTCCTGGATTCACCACAACTCATGTGATTCCGTTTGTAGATGGGGAGCCTATTTATAAAGGATGCTGCCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTAAAGCAACTTCTTTCACTTAAATATCCATATCATATGGCTAGGTTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATATTGCAATGGACTATGCTTCTGAAGCTCGGTTGTTTCAAAAAGGAGCTAAGGAAGCTGAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCTATAAGAGAGAGACAAGGTCAAAGATTACGAGAAATGGCTGAGGCAAAGAGGTCATCTAGAATAAACGAATTGGAAAATGAATTGCAtggtttggaatttcttttacgACAGCTTGAACAAGTTGAAGGTAGTGCTGTTCCATCTTTCCTAGCAGAGACTGGTTATGTCTCTAGGCAGGAGATAGAATCTGCCCGCATTAAAGTTACACAATCCCTACGGAAAGCAAAAGGTGAACCAAAGAATGAACAAGCTGAAACTGAAAAGGCTGATCCTGGCTCTAATGAGAAGTATTCTCTTATAAACATCCCTGATGACATGCTCACCCCAGACCAGCTCATTGAAAAGAAGAAACAGTTGTCACTGAAATCCATGTCTGAAGGGCGGCAGCGATTAAAGCAGAAGCGTTATGAAGAGGAATTGGAGCGAGAAAGGAAACAACAGCTAGAGGAGGAGAAACGCCAAGAGAACCCACAGCTTTACTTGGAACAATTGCGTGCTAGATACAAAGACCTTTCAGAGAGAGTTGACCAACGAAAACGGCTCAAGGCAAACGGATGTCATTCTAATGGAAATAATTTGTCCGGTGGCATTGGTCGTGGTGAGAGACTCAATGCTGCTCAAAGGGAGAGAATGCGCCTCTTGACAACTGCTGCATTTGATCGTGGTAAGGGTGAGGATACATTTGGTGCCAGAGATGAAGATTGGCAACTTTACAAATTGATGAGCAAAgataatgatgatggtgatgaggGACCAGATGAGGATGATGCTGAGTTAGCCCGCATCTCTTCAAGGCTACAGGACTTGGATCCAACATTTGTGCCCAAGTCAGAAACAGGTAGCTCTCAACCTGCTGAGGCGCCACGTGTACGTCCTCTCACTGAAGAAGATTTTCAGATTCTTTTTGGTGTTGAAAGGTTCAGATGCCCCGAAATTTTGTTCAATCCAAACTGGATTGCGGTTGATCAGGTAGGATTAGATGAGATGGCTGGGGTCTCAATAAGAAGGTTATCATGTAAGGATGAAGGCCTGGAAGAGAGGCTCACTAACTCCATACTTGTGACTGGTGGAAGTTCTCTTTTCCCCGGTATCATTGAACGCCTCGAAGCCGGAATTCGGATGATTAGGCCATGTGGATCACCCATAAAAGTAGTTAGAGCACTGGATCCAGTTATGGATGCATGGCGTGGGGCTGCAGCGTTTGCATCAGCCCCACAATTCCATACCCAAACTTTCAGTAGGAtggattattttgaaaagggTGAAGACTGGCTCCGCAGGTATCAGCTGAAATATTCTTTGTAA 2268 0.4312 MSVTYVVHHLQRLSSRRNTHNQSHSFFFCLTNTMPFISKIQRQFDYTLFGSATPIVIDNGASYFRIGWAGETQPRVVFRNIVQRPRHKATGETVTIVGDHDPALMKYFDCTRSGPRSAFDSNVVYQFEIMEYILDFGFDRLGATGSEIDHPVLITECVCNPVQSRSKMGELLFETYGVPSIAFGVDAAFSYKYNQQQGVCDKDGLAMCPGFTTTHVIPFVDGEPIYKGCCRTNIGGFHVTDYLKQLLSLKYPYHMARFTWEKVEDLKMEHCYIAMDYASEARLFQKGAKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIRERQGQRLREMAEAKRSSRINELENELHGLEFLLRQLEQVEGSAVPSFLAETGYVSRQEIESARIKVTQSLRKAKGEPKNEQAETEKADPGSNEKYSLINIPDDMLTPDQLIEKKKQLSLKSMSEGRQRLKQKRYEEELERERKQQLEEEKRQENPQLYLEQLRARYKDLSERVDQRKRLKANGCHSNGNNLSGGIGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDNDDGDEGPDEDDAELARISSRLQDLDPTFVPKSETGSSQPAEAPRVRPLTEEDFQILFGVERFRCPEILFNPNWIAVDQVGLDEMAGVSIRRLSCKDEGLEERLTNSILVTGGSSLFPGIIERLEAGIRMIRPCGSPIKVVRALDPVMDAWRGAAAFASAPQFHTQTFSRMDYFEKGEDWLRRYQLKYSL 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1484 755 MobiDBLite consensus disorder prediction 591 612 - -
Ssu9g1484 755 Gene3D - 209 235 - -
Ssu9g1484 755 SUPERFAMILY Actin-like ATPase domain 52 192 IPR043129 -
Ssu9g1484 755 MobiDBLite consensus disorder prediction 439 458 - -
Ssu9g1484 755 Gene3D Actin; Chain A, domain 4 576 644 - -
Ssu9g1484 755 PANTHER ACTIN-RELATED PROTEIN 5 49 747 IPR027664 -
Ssu9g1484 755 Coils Coil 342 362 - -
Ssu9g1484 755 CDD NBD_sugar-kinase_HSP70_actin 55 235 - -
Ssu9g1484 755 Gene3D - 715 743 - -
Ssu9g1484 755 Gene3D - 645 714 - -
Ssu9g1484 755 MobiDBLite consensus disorder prediction 392 423 - -
Ssu9g1484 755 Coils Coil 452 474 - -
Ssu9g1484 755 MobiDBLite consensus disorder prediction 392 413 - -
Ssu9g1484 755 Gene3D Actin; Chain A, domain 4 236 289 - -
Ssu9g1484 755 SUPERFAMILY Actin-like ATPase domain 203 748 IPR043129 -
Ssu9g1484 755 Coils Coil 482 502 - -
Ssu9g1484 755 SMART actin_3 52 751 IPR004000 -
Ssu9g1484 755 Gene3D - 51 203 - -
Ssu9g1484 755 PANTHER ACTIN 49 747 IPR004000 -
Ssu9g1484 755 Pfam Actin 620 748 IPR004000 -
Ssu9g1484 755 Pfam Actin 52 403 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1484 Ssu-Chr9 50224440 50230168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1484 621 748 Miscellaneous Gene Families AT2G42100 32.812 6.72e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1484 K11672 - gmx:100808396 1308.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1484 9 50224440 50230168 Ssu6g2927 6 67458231 67465482 PCT