Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2927 ATGCCTTTCATTTCCAAAATTCAGCGCCAATCCGATTTCAACCTCTTCGATTCCGACACTCCTATTGTGATAGACAACGGCGCCTCTTATTTCCGCATAGGGTGGGCGGGAGAGTCTGAACCTCGTGTTGTTTTCCGCAACATCGTGCAAAGGCCGCGCCATAAAGTAACCGGGGAAACTGTCACTATTGTGGGTGACCATGATCCGGCATTACTGAAATACTTTGACTGCACTCGCTCAGGGCCACGCTCTGCATTTGACAGCAATGTTGTTTACCAGTTTGAAACAATGGAATATATTCTTGATTTTGGATTTGACCGGATGGGTGCAAATGGAACAGAGATTGATCATCCTGTCCTTATCACAGAATGTGTATGCAACCCAGTTCAATCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCAATTGCCTTTGGTGTTGATGTGGCATTCAgctataaatataatcaacaacAAGGAGTTTGTGCTAAAGATGGTCTTGCTTTGTGTCCTGGATTCACCACAACCCATGTGATTCCGTTTGTAGATGGGGAACCTGTTTACAAAGGATGCTGTCGTACTAATATCGGTGGATTCCATAGAGGAGCCAAGGAAGCAGAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCAACTGAAGAGCCTCCTTCAGAGGAAGAGATTGCAAGAAAGGCAGcaataaaagagaaacaagGTCAAAGGCTTCGGGAAATGGCTGAGGCAAAGAGgtcttctaaaataaatgaactGGAAAATGAATTGCATGGTTTAGAGTTTCTGTTGCATCAGCTTGAACAAGTGGAAGAGAGTGAGGTTCCATCTTTCCTGGCAGAAACTGGCTATGTCTCTAGGCAGGAGATAGAATCTGCACGTAACAAAGTTGTGCAATCTTTACGGAAAGCAAAAGGTGAACCAAAGAATGAACAAGCTGAAACTGAAAAGGTTGATCTTGCTGCTAATGAGAAGTATTCTCTTATAAACATTCCTGATGACATGTTGACCCAAGAACAGCTcaatgaaaagaagaaacagTTGTCACTCAAATCTATGGCTGAAGGGAGGCAACGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAACGGGAGAGACAGCAACAGCTAGAGGAGGAGAAACGCCTAGAAAACCCGAAGCTTTACTTGGAACAATTGCACGCTAGATACAAAGACCTTTCAGAAAGAATTGACCTACAAAAACGACTTAAGACAAACGGAGGCCATTCAAATGGGAATAATCTGGCCGGTGGTGTTGGCCGTGGTGAAAGACTGAATGCTGCTCAGAGGGAACGAATGCGTCTCCTGACAACTGCAGCTTTTGATCGTGGTAAAGGTGAGGATACATTCGGTGCCAGAGATGAAGATTGGCAACTTTACAAATTGATGAGCAAAgattataataatgatgatgatgaggggCCTGATGAGGATGAGGCAGAGCTGGCCCGCATCTCTTCTAGGCTCCAGGACTTGGATCCAACATTTATACCCAAGTTAGAAGCCAGTACCTCTCAACCGGCTGAGGTGCCACGTTTTCGACCTCTGACCAAAGAAGATTTTCAAATCTTTCTTGGGGTCGAAAGATTCAGATGTTCTGAAATATTGTTTAATCCAAACTGGATTGGGGTTGATCAGGTAGGATTAGATGAGATGGCTGGGGTCTCAATAAGGAGGTTACCATACAAGGATGAAAGCTTGGAAGAGAGACTGACTAGTTCCATACTTGTTACTGGTGGAAGTTCTCTTTTCCCTGGTATAATTGAACGCCTAGAAGCTGGAATTCGGATGATTAGACCATGTGGCTCACCTATAAAAATAGTGAGAGCATTGGATCCAGTCATGGATGCATGGCGTGGGGCTGCTTCGTTTGCCACAGCCTCACAGTTCCATACGCAAACTTTCAGTAGACTGGATTATTATGAAAAAGGTGAAGACTGGCTTCGCAATTATCAACTGCAATATACATTGTAA 2031 0.4239 MPFISKIQRQSDFNLFDSDTPIVIDNGASYFRIGWAGESEPRVVFRNIVQRPRHKVTGETVTIVGDHDPALLKYFDCTRSGPRSAFDSNVVYQFETMEYILDFGFDRMGANGTEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDVAFSYKYNQQQGVCAKDGLALCPGFTTTHVIPFVDGEPVYKGCCRTNIGGFHRGAKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELHGLEFLLHQLEQVEESEVPSFLAETGYVSRQEIESARNKVVQSLRKAKGEPKNEQAETEKVDLAANEKYSLINIPDDMLTQEQLNEKKKQLSLKSMAEGRQRLKQKRYEEELERERQQQLEEEKRLENPKLYLEQLHARYKDLSERIDLQKRLKTNGGHSNGNNLAGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDYNNDDDEGPDEDEAELARISSRLQDLDPTFIPKLEASTSQPAEVPRFRPLTKEDFQIFLGVERFRCSEILFNPNWIGVDQVGLDEMAGVSIRRLPYKDESLEERLTSSILVTGGSSLFPGIIERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGAASFATASQFHTQTFSRLDYYEKGEDWLRNYQLQYTL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2927 676 Gene3D Actin; Chain A, domain 2 49 85 - -
Ssu6g2927 676 SUPERFAMILY Actin-like ATPase domain 18 158 IPR043129 -
Ssu6g2927 676 Coils Coil 262 282 - -
Ssu6g2927 676 Coils Coil 369 398 - -
Ssu6g2927 676 PANTHER ACTIN 18 668 IPR004000 -
Ssu6g2927 676 SMART actin_3 19 673 IPR004000 -
Ssu6g2927 676 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Ssu6g2927 676 Gene3D - 22 150 - -
Ssu6g2927 676 Gene3D - 636 664 - -
Ssu6g2927 676 Gene3D - 566 635 - -
Ssu6g2927 676 Coils Coil 402 422 - -
Ssu6g2927 676 Gene3D Actin; Chain A, domain 4 470 565 - -
Ssu6g2927 676 SUPERFAMILY Actin-like ATPase domain 170 669 IPR043129 -
Ssu6g2927 676 PANTHER ACTIN-RELATED PROTEIN 5 18 668 IPR027664 -
Ssu6g2927 676 Gene3D - 152 204 - -
Ssu6g2927 676 Pfam Actin 541 668 IPR004000 -
Ssu6g2927 676 Pfam Actin 18 203 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2927 Ssu-Chr6 67458231 67465482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2927 542 663 Miscellaneous Gene Families AT2G42100 31.967 1.57e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2927 K11672 - gmx:100804305 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2927 6 67458231 67465482 Ssu6g2927 6 67458231 67465482 ECH
Ssu9g1484 9 50224440 50230168 Ssu6g2927 6 67458231 67465482 PCT