Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1478 ATGATGAACCGTAGTCATGAAGAGGAGGCTCCAAGTAAACAGAGCGAGGCTATTGTGAGCCTTGAGAAGGAAATTGAAAATCAGAAACAGAAATTTGTAGATATGGAGCATAAACATGCTGAGAAAGTTGTTATTATGAACAAACTCATAGCCGGACTAGCAGAGAACATTGATTACAGGCAAAGAAATCTGTTGGAAATGGAAAACAAGTATAATGAATCGTTGAACATGATCATGAAGTTGATGGGTGAGGGAGATACGTTGCATGAGGAATGTCACAaagAATTACAACAGTTGACGGTCATGAACTCTAATATAAGTCATGACATGGAATCTATAAAGAAAGAGCATGAACAGGTCAGCAAGGAATTGAAGGAGAATAAGACCCTAAATGATCTGCAGCAAAAGACGTTTACGGAGGTGATTCAAAAGCATGTAATGGAAATTAGCTCCCTTCATATTGCTGCTGTGAGGCTACAAAATGATTATGACAATGTATTGAAAATGGCTGACAATTTAAAGGAGCAAAATAAACAACTCAATGCTAAAATCACTAGCcttgaaaaaggaaaacaacaGACAAGTACACAGGAACTTACACATGACAAGAATGCAATGAAAAATAACTCTTTTATGGCTGCTGCTCTGGAACGAATGAAAGCTgatgaaattgaaaatgttatGAAACTGGCTGAAGATCAAAAGAGGCAAATAGAACAACTCAATGCTAAAATCATTCAGCTTGAAAAACAACTTGATTTGAAACAAGAGCTGGAGTTGGAGATTCAGCAATTAAAAGGATCATTAAATGTGTTGAAGCAAATGAAAGATGATGAAGATACAGAAGTTCTGAAGAAGGTGGATACTTTACAAAACGATTTAAGAGACAAGGAACAGTCACTTCAGTATTTGGATGCATTGAAACAAACACTAATCATTAAAGAGCGTGAGTATAATGATGAGCTGCAGGAAGCTCAACAAGCATTGGTTAATGGCTTTAAAGAGTTATCATCTCATGGCAATATTCGTTTGAAGAAAATGGGGGAACTTAACATTAGACCATTCCTTGAAGcaacaaagaaaagatataataagGAGGAAGCTGAAGAGAGAGCTTCAGAACTGTGTTCATTGTGGGAAGAGTATCTAAAGGACCCAGATTGGCATCCATTCAAAGTTATCACGGTTGAAGGGAAAGAAAAGGAAATTATTAGAGATGACGATGAAAAGCTGAATGGGTTGAAAAATGACTTGGGTGAAGGGGCATATAAAGCAGTGGTGAAAGCGTTGTCAGAGATAAATGAACATAATCCTGGTGGGGGATACTTAACCTCGGTATTATGGAACTATAAACAAGGAAGGAGAGCAACTCTGAAAGAAGGAATACAATTTCTGTTGAATCAATGGAAAGTTCTTAAACGCAAGAGGGGAATGATGTGA 1440 0.3597 MMNRSHEEEAPSKQSEAIVSLEKEIENQKQKFVDMEHKHAEKVVIMNKLIAGLAENIDYRQRNLLEMENKYNESLNMIMKLMGEGDTLHEECHKELQQLTVMNSNISHDMESIKKEHEQVSKELKENKTLNDLQQKTFTEVIQKHVMEISSLHIAAVRLQNDYDNVLKMADNLKEQNKQLNAKITSLEKGKQQTSTQELTHDKNAMKNNSFMAAALERMKADEIENVMKLAEDQKRQIEQLNAKIIQLEKQLDLKQELELEIQQLKGSLNVLKQMKDDEDTEVLKKVDTLQNDLRDKEQSLQYLDALKQTLIIKEREYNDELQEAQQALVNGFKELSSHGNIRLKKMGELNIRPFLEATKKRYNKEEAEERASELCSLWEEYLKDPDWHPFKVITVEGKEKEIIRDDDEKLNGLKNDLGEGAYKAVVKALSEINEHNPGGGYLTSVLWNYKQGRRATLKEGIQFLLNQWKVLKRKRGMM 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1478 479 Coils Coil 221 275 - -
Ssu9g1478 479 Coils Coil 156 190 - -
Ssu9g1478 479 Pfam XH domain 345 475 IPR005379 -
Ssu9g1478 479 Coils Coil 110 130 - -
Ssu9g1478 479 PANTHER RIBONUCLEASE P SUBUNIT P38 203 479 IPR045177 GO:0080188
Ssu9g1478 479 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 203 479 - -
Ssu9g1478 479 Coils Coil 18 38 - -
Ssu9g1478 479 Coils Coil 304 328 - -
Ssu9g1478 479 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 41 190 - -
Ssu9g1478 479 PANTHER RIBONUCLEASE P SUBUNIT P38 41 190 IPR045177 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1478 Ssu-Chr9 50106680 50112384 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1478 - - gmx:102665742 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1478 9 50106680 50112384 Ssu6g2923 6 67373806 67381328 PCT