Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2923 ATGGCTCACTGCTCTAACAAGGATAATGACACAAGTGCATCTCAATTAAGTTGGTGGTACGTAGATATATCTTATCAAGAACTCAAAAAGGGAAGTTACAAAGTGAAAAGCTCAGATGAAACTTTCATTTGTCCATACTGCCCTGAGAGAAAGCAGGATTATAAGTACAGGGAACTCCTTAATCATGCTTCTGGGGTTGGTCGGAGTAGTTCAGAAAAGAGAACTGCAAAAGAGAAGGCTAATCATCTGGCTTTAGTGAAATATTTGGAAAAGGATCTTGCGTATACGGATGGCCCATCAAAACCTGTAGATAAAGGTGCCAAATTGTTAAGCCCAGGAGAAACCGTAATGCCTCACTGCTCTAACAAGGATACTGATATAAGTGCATCTCAAATAAGTTGGTGGTATGTAGATACATCTTATGAAGAACTCAAAAGGGGAAGTCACAATGTGAAAACCTCAGACGTGACTTTCATCTGTCCATACTGCCCTAGGAGAAAACAGGATTATTTGTACAGGGAACTCCTAGAACATGCTTATATGGTGGGTCGGAGTAGTTCTGAAAAGAGAAGTGCTAGAGAGAGGGCCAATCATTTTGCTTTAGTGAAATATTTGGAAAATGATCTTATTATTATGAATGGCCTGTCAAAACCTGTAGATAAAGGTACCAAAGTATTAAGCCTAGAACAAACTGTAGTGGCTCAATGCTCTAACAAGGAGACTAGTATGAGTGCATCTCAAATAAATTGGTGGGAACTTTTTGAACATGCTTCTGGGGTGGGTCAGAGTAGTTCACAAAAGAGAAGTGTCAGAGAGAAGGCCACTCATCTGGCTTTAATGAGATACTTGAAAAATGATCTTGTGAATATGAATGGTCCTTCAAAATCTGTAATTGAAGGTAACCCCCCAGTTAGAGGGGTGGGTCAGAGTAGTTCACAAAAGAGAAGTGCCAGAGAAGAGGCTACTCATCTGGCTTTAGCAAAATACTTGAAAAAGGATCATACAAATGTGAGTGGTCCATCAAAACCTGTAAATGAAGGAACCATAATATTAATCCCAGGAGCAACTGTAGTTGGTTGCTGCTCTGACAAAGATAGCAATATAAATTCATCTCAAATTGGGTGGTATGTAGATAAATCTTATGAAGAACTCAAAAAGGGAAGTCACAATGTGAAAACCTCAGATGAGACTTTCACGTGCCCATACTGCcctaataaaaagataaaacggGATTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTGAGTCAGAGTAGATCACAAAAAAGAAGTTTCATCGAAAAGGCCAATCATCTGGctttagtaaaatatttgaaaaaggaTCTTATGAATGTGGGTGCTCCATGTCCGTCAAAACCTGTGGATCAAGGCACCATAACAATAAACCCAGGAGAAACTGTAATGGGTCACTACTCTCGTGAAGATACTAATATAAGGGCATCTCAAATAAGTGGGTGGTATGTACATAAATCCTATGAAGCACTCAAAAAGGGAAGTCACAATGTGAAAACCTCAGAGAAGACTTTCTCATGTCCGTACTGCcctaataaaaagagaaaacggGATTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCAGAGTAGCTCACAAAAGAGAAGTGCCATTGAAAAGGCTAATCATCTGgctttaatgaaatatttggaaAAGGATCTTATGAATGTGGATGGTCCACCAAAAACTGCAGATGAAGGCAGTCCTCCTTTTAATTCTGAGAAGCAGTTTGTGTGGCCATGGATTGGGATCGTGGTTAATATTCCTACTAGACAGACAGAAGATGGACGTTCTGTTGGGGAAAGTGGTTCCAAGCTGAGGGATGAATACCGAAGCAGGGGATTTAATCCATGTAGAGTCCGCACTCTTTCTAATTTCTGGGGTCACTCTGGAACTGCAGTTGTggaattcaataaaaattggaCAGGGTTAGATAATGCTTTGGCATTTGAAAGAGCATATGAAATAGATCATCATGGGAAAAAAGACTGGTTTGCTAATACTGAGCAGAAGTCTGGTATTTATGCATGGATTGCTCGAGCTAATGACTACAAGATGAACAATATCATTGGGGAACAACTGCAGAAGATGGGGGATATCAAAACAATATCTGAACTTATGGAAGAAGCAGCTCGGATGCAGGATAAACTTGTGTCCAGCTTGAATAACACTCTTCAGGTCAAGAGGAAGCGATTAAAGGAGATGGAAGTAAAATACAATGAGGCTTCATGTCGCATGGACATTGTAATGGGGGAAATAGATAAGCTCACTCAAGATCACAGTCAAGAGATGAAGAAAATACAATCAAGTGCAACTCAACATTTCCAGAATATTTTTAATGGTCATGAAAGGCTTAAGTTGCAACTGGAATCTCAGACAAGAGAGCTTTCGTTGCGGAGAATTGAATTGGAAAAACGTGAGACACATaatgaaagtgaaagaaaaaagttagaagaaGAGATTATGGAGAATGCATTGAAAAATAGCTCTCTTAGAATGGCTGTTCTGGAGCAAAAAAAAGCTggtgaaaatgttttaaaactgGCTGCAGATCAAAAGCGGCAAAAAGAACAACTCCATGCTAAAATCATCCAGCTTGAAAAACAACTGGAAGTGAAACAAAAACTAGAATTGGAGATTCAACAACTGAAAGGAAAATTAAATGTCATGAAGCACATGGAAGATGTTGGGGACTCAGAAGTTCTGAATAAGGTGGATGCTTTACATAAGGAtttaagagaaaaggaacagtCACTACGAGACTTAGATGCCCTGAACCAAACACTGATTATTAAAGAGCGTCAGAGCAATGATGAGCTACAGGAAGCTCGAAAAGAATTGATTAATGGCATTAAAGAGATATCTTGTCGTGCTAATGTTGGTGTGAAGAGAATGGGGGAGCTTGATATTAGACCATTCCTTGAAGgtatgaagaaaaaatataatgatgagGATGCAGAAGATAGAGCTTCAGAACTGTGTTCATTGTGGGAAGAGTATATGAAGGACCCAGACTGGCATCCGTTTAAAATTACCATAATTGAAGGGAAACATCAGGAAATCAtagatgatgaagatgaaaagTTGAAAGGACTGAAAAATGAGATGGGTGGAGGAGTCTACAAAGCTGTGGTGACAGCTTTGACAgagataaatacatataatccAAGTGGGCGGTATATAACCTCTGAATTATGGAATTATGAAGAGGGAAAGAGAGCTACCTTGCAAGAAGGAGTAAAATTGTTATTGATGCAATGgaaactaaataaacaaaaaagggGGACGATGTGA 3345 0.371 MAHCSNKDNDTSASQLSWWYVDISYQELKKGSYKVKSSDETFICPYCPERKQDYKYRELLNHASGVGRSSSEKRTAKEKANHLALVKYLEKDLAYTDGPSKPVDKGAKLLSPGETVMPHCSNKDTDISASQISWWYVDTSYEELKRGSHNVKTSDVTFICPYCPRRKQDYLYRELLEHAYMVGRSSSEKRSARERANHFALVKYLENDLIIMNGLSKPVDKGTKVLSLEQTVVAQCSNKETSMSASQINWWELFEHASGVGQSSSQKRSVREKATHLALMRYLKNDLVNMNGPSKSVIEGNPPVRGVGQSSSQKRSAREEATHLALAKYLKKDHTNVSGPSKPVNEGTIILIPGATVVGCCSDKDSNINSSQIGWYVDKSYEELKKGSHNVKTSDETFTCPYCPNKKIKRDYVYREILEHASGVSQSRSQKRSFIEKANHLALVKYLKKDLMNVGAPCPSKPVDQGTITINPGETVMGHYSREDTNIRASQISGWYVHKSYEALKKGSHNVKTSEKTFSCPYCPNKKRKRDYVYREILEHASGVGQSSSQKRSAIEKANHLALMKYLEKDLMNVDGPPKTADEGSPPFNSEKQFVWPWIGIVVNIPTRQTEDGRSVGESGSKLRDEYRSRGFNPCRVRTLSNFWGHSGTAVVEFNKNWTGLDNALAFERAYEIDHHGKKDWFANTEQKSGIYAWIARANDYKMNNIIGEQLQKMGDIKTISELMEEAARMQDKLVSSLNNTLQVKRKRLKEMEVKYNEASCRMDIVMGEIDKLTQDHSQEMKKIQSSATQHFQNIFNGHERLKLQLESQTRELSLRRIELEKRETHNESERKKLEEEIMENALKNSSLRMAVLEQKKAGENVLKLAADQKRQKEQLHAKIIQLEKQLEVKQKLELEIQQLKGKLNVMKHMEDVGDSEVLNKVDALHKDLREKEQSLRDLDALNQTLIIKERQSNDELQEARKELINGIKEISCRANVGVKRMGELDIRPFLEGMKKKYNDEDAEDRASELCSLWEEYMKDPDWHPFKITIIEGKHQEIIDDEDEKLKGLKNEMGGGVYKAVVTALTEINTYNPSGRYITSELWNYEEGKRATLQEGVKLLLMQWKLNKQKRGTM 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2923 1114 Gene3D XS domain 588 757 IPR038588 -
Ssu6g2923 1114 Coils Coil 720 762 - -
Ssu6g2923 1114 Coils Coil 922 974 - -
Ssu6g2923 1114 PANTHER RIBONUCLEASE P SUBUNIT P38 117 167 IPR045177 GO:0080188
Ssu6g2923 1114 PANTHER RIBONUCLEASE P SUBUNIT P38 166 231 IPR045177 GO:0080188
Ssu6g2923 1114 PANTHER RIBONUCLEASE P SUBUNIT P38 527 1114 IPR045177 GO:0080188
Ssu6g2923 1114 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 477 526 - -
Ssu6g2923 1114 Coils Coil 803 837 - -
Ssu6g2923 1114 MobiDBLite consensus disorder prediction 294 318 - -
Ssu6g2923 1114 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 409 467 - -
Ssu6g2923 1114 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 251 304 - -
Ssu6g2923 1114 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 306 347 - -
Ssu6g2923 1114 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 117 167 - -
Ssu6g2923 1114 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 51 - -
Ssu6g2923 1114 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 361 407 - -
Ssu6g2923 1114 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 108 - -
Ssu6g2923 1114 Coils Coil 866 910 - -
Ssu6g2923 1114 Pfam XS domain 591 702 IPR005380 GO:0031047
Ssu6g2923 1114 PANTHER RIBONUCLEASE P SUBUNIT P38 409 467 IPR045177 GO:0080188
Ssu6g2923 1114 PANTHER RIBONUCLEASE P SUBUNIT P38 251 304 IPR045177 GO:0080188
Ssu6g2923 1114 PANTHER RIBONUCLEASE P SUBUNIT P38 306 347 IPR045177 GO:0080188
Ssu6g2923 1114 PANTHER RIBONUCLEASE P SUBUNIT P38 1 51 IPR045177 GO:0080188
Ssu6g2923 1114 Pfam XH domain 980 1110 IPR005379 -
Ssu6g2923 1114 PANTHER RIBONUCLEASE P SUBUNIT P38 50 108 IPR045177 GO:0080188
Ssu6g2923 1114 PANTHER RIBONUCLEASE P SUBUNIT P38 477 526 IPR045177 GO:0080188
Ssu6g2923 1114 PANTHER RIBONUCLEASE P SUBUNIT P38 361 407 IPR045177 GO:0080188
Ssu6g2923 1114 Pfam XS zinc finger domain 252 279 IPR005381 GO:0031047
Ssu6g2923 1114 Pfam XS zinc finger domain 160 202 IPR005381 GO:0031047
Ssu6g2923 1114 Pfam XS zinc finger domain 520 563 IPR005381 GO:0031047
Ssu6g2923 1114 Pfam XS zinc finger domain 44 86 IPR005381 GO:0031047
Ssu6g2923 1114 Pfam XS zinc finger domain 400 444 IPR005381 GO:0031047
Ssu6g2923 1114 CDD RRM_like_XS 594 701 IPR005380 GO:0031047
Ssu6g2923 1114 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 166 231 - -
Ssu6g2923 1114 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 527 1114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2923 Ssu-Chr6 67373806 67381328 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2923 - - gmx:100790814 1989.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2923 6 67373806 67381328 Ssu6g2923 6 67373806 67381328 ECH
Ssu9g1478 9 50106680 50112384 Ssu6g2923 6 67373806 67381328 PCT