Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1457 ATGGACGAAGAGGTGCGCAAGATCTTCAACAAGTTCGATAAGAACGGCGACGGGAAGATCTCGTGCACGGAGCTGCAGGAGATGATGGCGACGCTGGGATCGAACACGACGTCGGAGGAGGTGCGGCGCATGATGGCGGAGCTTGACCGGAACGGCGACGGCTTCATTGATTTGAAGGAGTTCGGGGAGTTCCATTGCGGCGGCGACGGGAGGGAGCTCCGGGAGGCGTTCGAGCTGTACGACCTGGACAAGAACGGGCTGATCTCGGCGAAGGAGCTGCACTCCGTGATGCGGAGGCTGGGGGAGAAATGCTCCCTCAGCGATTGCCGGAGGATGATCGGAAACGTCGATGCCGACGGCGACGGCAACGTCAATTTCGAAGAGTTCAAGAAGATGATGACTCGCTCCTAG 411 0.5937 MDEEVRKIFNKFDKNGDGKISCTELQEMMATLGSNTTSEEVRRMMAELDRNGDGFIDLKEFGEFHCGGDGRELREAFELYDLDKNGLISAKELHSVMRRLGEKCSLSDCRRMIGNVDADGDGNVNFEEFKKMMTRS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1457 136 SUPERFAMILY EF-hand 3 135 IPR011992 -
Ssu9g1457 136 CDD EFh 72 134 IPR002048 GO:0005509
Ssu9g1457 136 CDD EFh 4 61 IPR002048 GO:0005509
Ssu9g1457 136 Pfam EF-hand domain pair 72 134 IPR002048 GO:0005509
Ssu9g1457 136 Pfam EF-hand domain pair 3 62 IPR002048 GO:0005509
Ssu9g1457 136 Gene3D - 1 69 - -
Ssu9g1457 136 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Ssu9g1457 136 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 136 - -
Ssu9g1457 136 ProSiteProfiles EF-hand calcium-binding domain profile. 104 136 IPR002048 GO:0005509
Ssu9g1457 136 ProSiteProfiles EF-hand calcium-binding domain profile. 36 64 IPR002048 GO:0005509
Ssu9g1457 136 SMART efh_1 108 136 IPR002048 GO:0005509
Ssu9g1457 136 SMART efh_1 40 68 IPR002048 GO:0005509
Ssu9g1457 136 SMART efh_1 72 100 IPR002048 GO:0005509
Ssu9g1457 136 SMART efh_1 4 32 IPR002048 GO:0005509
Ssu9g1457 136 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Ssu9g1457 136 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Ssu9g1457 136 Gene3D - 70 136 - -
Ssu9g1457 136 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Ssu9g1457 136 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 136 - -
Ssu9g1457 136 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1457 Ssu-Chr9 49832473 49832883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1457 3 133 EF-hand Containing Proteins AT1G66400 56.522 7.73e-51 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1457 K13448 - gmx:100806813 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1457 9 49832473 49832883 Ssu6g2895 6 66957457 66957879 PCT