Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2895 ATGGACGACGAGGTGCGCCAGATCTTCAACAAGTTCGACAAAGACGGCGACGGAAAGATCTCGATTAAGGAGCTGAAGGAGACGCTCGTCACGCTGGGATCCAAACCGAGTCAGGACGAGGTGAAACGCATGATGGAGGAGCTCGACCAAAACGGCGACGGTTTCATCGACCTCAAGGAGTTCGCGGAATTCCACTGCAATGACGCCGGAAACGACGACTCGAAGGAGCTCCGCGACGCGTTCGACCTATACGACGTCGACAAGAACGGCCTCATCTCCGCGAAGGAGCTGCACGACGTGCTCCGGAAGCTCGGTGAGAAGTGCTCCCTCGGCGACTGCCGGAGAATGATCAGCAACGTAGACGCCGACGGCGACGGCAACGTCAACTTCGAGGAGTTCAAGAAGATGATGGCTCGCTCCTAG 423 0.5768 MDDEVRQIFNKFDKDGDGKISIKELKETLVTLGSKPSQDEVKRMMEELDQNGDGFIDLKEFAEFHCNDAGNDDSKELRDAFDLYDVDKNGLISAKELHDVLRKLGEKCSLGDCRRMISNVDADGDGNVNFEEFKKMMARS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2895 140 Gene3D - 67 140 - -
Ssu6g2895 140 CDD EFh 76 138 IPR002048 GO:0005509
Ssu6g2895 140 SUPERFAMILY EF-hand 3 138 IPR011992 -
Ssu6g2895 140 ProSitePatterns EF-hand calcium-binding domain. 85 97 IPR018247 -
Ssu6g2895 140 ProSiteProfiles EF-hand calcium-binding domain profile. 108 140 IPR002048 GO:0005509
Ssu6g2895 140 Gene3D - 1 66 - -
Ssu6g2895 140 ProSitePatterns EF-hand calcium-binding domain. 121 133 IPR018247 -
Ssu6g2895 140 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Ssu6g2895 140 SMART efh_1 40 68 IPR002048 GO:0005509
Ssu6g2895 140 SMART efh_1 112 140 IPR002048 GO:0005509
Ssu6g2895 140 SMART efh_1 4 32 IPR002048 GO:0005509
Ssu6g2895 140 SMART efh_1 76 104 IPR002048 GO:0005509
Ssu6g2895 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 140 - -
Ssu6g2895 140 CDD EFh 4 65 IPR002048 GO:0005509
Ssu6g2895 140 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Ssu6g2895 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 140 - -
Ssu6g2895 140 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
Ssu6g2895 140 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Ssu6g2895 140 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
Ssu6g2895 140 Pfam EF-hand domain pair 76 137 IPR002048 GO:0005509
Ssu6g2895 140 Pfam EF-hand domain pair 4 64 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2895 Ssu-Chr6 66957457 66957879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2895 3 137 EF-hand Containing Proteins AT1G66400 55.797 2.55e-49 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2895 K13448 - gmx:100796491 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1457 9 49832473 49832883 Ssu6g2895 6 66957457 66957879 PCT