Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1450 ATGGCAACTGGAGAGGTCATTAATAAACCTCCTTCACTTCCTCCGTACCCCGAGaTGATTTTGGAGGCAATAGAAGCACTGAATGAAGAGAACGGTTccaataaatcatcaatttcaaaGTACATAGAATCCACGTACGGTGGATTGCCTCAGGGCCACAAGGTGCTACTCAATGTGCACCTCGCAAAAATGAGGGACAGTGGGGTGCTACTGTTTTGGAAGAACAACTACACCAAGCGTGATCCAAACGCGCCACCGCGGCGGGGCCGTGGCAGGCCCCCCAAGCCCAAGGAGCCTCTGCCTCCGGGCATTGTCTTGCCACCGCCCAGGCCCAGGGGCCGCCCACCAAAGGGCCCAAATGACCCGCCAAGGCCACCCAAAGTTAAGGCCTCCGGTGGGAGTGGCAGGCGAGGTCGGCCCAGAAAGATGGCCCGGCCCACCGGAGGATTCGGTGAGGCACCTCGCTCCACAGGGAAGGCAGCTCCCAGTGGGAGGCCCAGAGGTAGGCCTCCCAAAGTGAAGCCCGTGCTGACGGAAATTAGTGCTTAA 549 0.5701 MATGEVINKPPSLPPYPEMILEAIEALNEENGSNKSSISKYIESTYGGLPQGHKVLLNVHLAKMRDSGVLLFWKNNYTKRDPNAPPRRGRGRPPKPKEPLPPGIVLPPPRPRGRPPKGPNDPPRPPKVKASGGSGRRGRPRKMARPTGGFGEAPRSTGKAAPSGRPRGRPPKVKPVLTEISA 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1450 182 MobiDBLite consensus disorder prediction 81 95 - -
Ssu9g1450 182 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu9g1450 182 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Ssu9g1450 182 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Ssu9g1450 182 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Ssu9g1450 182 PRINTS AT-hook-like domain signature 162 172 IPR017956 GO:0003677
Ssu9g1450 182 MobiDBLite consensus disorder prediction 76 182 - -
Ssu9g1450 182 CDD H15 10 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu9g1450 182 PANTHER HISTONE H1 1 179 - -
Ssu9g1450 182 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Ssu9g1450 182 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Ssu9g1450 182 SMART AT_hook_2 164 176 IPR017956 GO:0003677
Ssu9g1450 182 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Ssu9g1450 182 MobiDBLite consensus disorder prediction 96 126 - -
Ssu9g1450 182 Gene3D - 8 85 IPR036388 -
Ssu9g1450 182 PRINTS High mobility group protein (HMGY) signature 85 97 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Ssu9g1450 182 PRINTS High mobility group protein (HMGY) signature 109 120 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Ssu9g1450 182 PRINTS High mobility group protein (HMGY) signature 123 142 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Ssu9g1450 182 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu9g1450 182 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu9g1450 182 PANTHER HMG-Y-RELATED PROTEIN A 1 179 IPR031059 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1450 Ssu-Chr9 49693517 49694406 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1450 - - gmx:100803968 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1450 9 49693517 49694406 Ssu6g2883 6 66791838 66792191 PCT