Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2883 ATGGGTGGTGCTGAtgctgttgttgttattgtagaGATAATGAAAGCACTTGAAGCACTGAATGAACCGAGTGGATCCAGCAAATCAGCCATATCAAAGCACATAGAATCCACCTACGGTGAGTTGCCAGACTCAAATCTTTTGGTTCAACACCTCAACAAGATGAAAGAGAGTGGAGAGCTTGTGTTCTTGAAGAACAACTACATGAAGCCTGACCCAAATGCCCCACCAAAGAGGGCCGTGGAAGGCCACCAAAACCAAAGGTTCCTTTGCCTCCAGGCACTGTTTTGTCCCCTCCAAGGCCAAGGGGTCCCCCTAAGGACCCAAATGCCCCACCAAGAGCCCAAAGGCTAA 354 0.4689 MGGADAVVVIVEIMKALEALNEPSGSSKSAISKHIESTYGELPDSNLLVQHLNKMKESGELVFLKNNYMKPDPNAPPKRAVEGHQNQRFLCLQALFCPLQGQGVPLRTQMPHQEPKG 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2883 117 SUPERFAMILY "Winged helix" DNA-binding domain 12 79 IPR036390 -
Ssu6g2883 117 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 72 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu6g2883 117 PANTHER HISTONE H1 13 80 - -
Ssu6g2883 117 Gene3D - 9 79 IPR036388 -
Ssu6g2883 117 PANTHER HMG-Y-RELATED PROTEIN A 13 80 IPR031059 GO:0003677|GO:0005634
Ssu6g2883 117 SMART h15plus2 3 67 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu6g2883 117 Pfam linker histone H1 and H5 family 13 66 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2883 Ssu-Chr6 66791838 66792191 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2883 - - gmx:100793697 110.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1450 9 49693517 49694406 Ssu6g2883 6 66791838 66792191 PCT