Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1446 ATGGCCATGCGCTTTCTTCTGCTTCTTTTTGCAGTGTATGTTGCTGCAACTGATGAAGAACCATTCATAGGGGTGAATATTGGAAGAGATCTCTCAGATATGCCTCACCCCACTCAAGTAGTAGCACTACTTAAAGCCCAGCAAATTAGACATGTTCGGTTGTATGATGCTGACGAAGCTATGCTCGTTGGACTTGCAAATACAGGAATTCAAGTTGCTGTGTCTGTCCCTAATGAAGAGATCCTAGCAATTGGTCAATCAAATACCACTGCTGCAAAATGGGTTTCCCATAATGTGGTAGCACATTACCCTGCCACTAACATAACAGCTATTTGTGTTGGTTCTGAGGTTTTAACTACCCTCCCCAATGCAGCAAAAGTGCTTGTCAGCGCCCTTAAGTTCATTCACTCAGCCGTTGTGGCATCCAATCTCGATCGCCAAATCAAAGTTTCAACACCCCTTTCCTCTTCCATGATCCTTGACTCATTTCCACCTTCTCAAGCCTTCTTTAACCGCTCACTGAATCAAGTCTTGGTCCCAATGCTTGGTTTCTTGCAATCCACTAACTCTTATCTCATGCTCAACATCTACCCTTACTATGACTACATGCAGTCAAATGGTGTGATCCCATTGGACTATGCACTCTTCAAACCTCTCCCGCCAAACAAAGAAGCCATTGATTCTAACACCCTTCTCCACTACTCCAATGTGTTTGATGCTGTGGTTGATGCAGCATACTTTGCCATGTCTTTTCTGAACTACACTAACATTCCTGTGATGGTGACAGAAACAGGCTGGCCCTCAAAAGGTGACTCTAACGAGCCTGATGCAACAGTGGAAAATGCCAACACTTACAACAGCAATTTGATCAAGCGTGTGCTTAACATAACCGGGACTCCCAAACACCCCGGAATTGGTGTTAGTACTTACATCTATGAGCTCTACAATGAGGACACAAAGGCAGGACCATTGTCAGAGAAGAACTGGGGTTTGTTTGATGCAAATGGGGTGCCTGTTTATGTTCTGCACTTGACAGGATCGGGAGGAGTGTTGGCAAATGACACCACCAATCAAACTTACTGCATTGCAAAGGATGGTGCTGATCCTAAGATGCTGCAGGCTGGAATAGATTGGGCATGTGGACCTGGCAAGGTGGATTGCTCTCCTTTGCTGCAGGGAGAACTATGTTATGAACCAGACAATGTGGTTGCACATGCAAATTATGCTTTTGACACTTACTATCATCTGATGGGAAAGTCTCCAGAGTCATGTGATTTCAATGACATGGCTACAATCTCCACCACCGATCCAAGTCATGGTTCCTGTGTATTTCCAGGAAGTATTGGCAAAAATGGCACCTTCCCCAACGTCACGTTATCATCAATGAATTCCACAAATTCAATTTCTTCTGCCTGCAATCTCCATCGTGGTGAATTGGGAATTAGAAGCCTTCTAATGGTGATAGTACTTCTAATATGGGGAGTGGTTTCGCTATGA 1497 0.4442 MAMRFLLLLFAVYVAATDEEPFIGVNIGRDLSDMPHPTQVVALLKAQQIRHVRLYDADEAMLVGLANTGIQVAVSVPNEEILAIGQSNTTAAKWVSHNVVAHYPATNITAICVGSEVLTTLPNAAKVLVSALKFIHSAVVASNLDRQIKVSTPLSSSMILDSFPPSQAFFNRSLNQVLVPMLGFLQSTNSYLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAIDSNTLLHYSNVFDAVVDAAYFAMSFLNYTNIPVMVTETGWPSKGDSNEPDATVENANTYNSNLIKRVLNITGTPKHPGIGVSTYIYELYNEDTKAGPLSEKNWGLFDANGVPVYVLHLTGSGGVLANDTTNQTYCIAKDGADPKMLQAGIDWACGPGKVDCSPLLQGELCYEPDNVVAHANYAFDTYYHLMGKSPESCDFNDMATISTTDPSHGSCVFPGSIGKNGTFPNVTLSSMNSTNSISSACNLHRGELGIRSLLMVIVLLIWGVVSL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1446 498 Pfam X8 domain 360 431 IPR012946 -
Ssu9g1446 498 Gene3D Glycosidases 22 348 - -
Ssu9g1446 498 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Ssu9g1446 498 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
Ssu9g1446 498 Gene3D - 353 446 - -
Ssu9g1446 498 SMART X8_cls 359 444 IPR012946 -
Ssu9g1446 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 6 479 - -
Ssu9g1446 498 SUPERFAMILY (Trans)glycosidases 23 343 IPR017853 -
Ssu9g1446 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 479 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1446 Ssu-Chr9 49643635 49646789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1446 18 490 Glycoside Hydrolase AT1G66250 73.053 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1446 K19891 - gmx:100804152 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1446 9 49643635 49646789 Ssu6g2871 6 66615159 66617852 PCT