Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2871 ATGGCTTTGCATTTTCTTCTCCTGTTTTTTGCAGTAGTGTCTGTTGTTGCAGCTGATGAAGAAGCATTTATTGGAGTGAATATTGGAACAGATCTCTCAGATATGCCACACCCTACTCAAGTAGTAGCTCTACTTAAATCCCAGCAAATTCGGCACGTTCGATTGTATGATGCTGACCAAGCTATGCTCCTTGCACTTGCAAAGACAGGCATTCAAGTTGTTGTGACTGTCCCTAATGAAGAGCTCCTAGCAATTGGTCAATCGAATTCCACGGCTGCCAATTGGGTTTCCCGCAACGTGGTGGCACATTATCCAGCCACCAATATCACAGCCATTTGTGTTGGTTCTGAGGTTTTAACTACCCTCCCGAATGCGGCAAAAGTACTTGTCAATGCTATTAAATACATTCATTCAGCACTTGTTGCATCCAATCTCGATCGTCAAGTTAAAGTTTCAACACCCCTTTCCTCTTCCATCATCCTTGATTCATTTCCACCTTCTCAGGCCTTCTTTAACCGCTCACTTGATCCAGTTTTAGTCCCACTACTTGATTTCTTGCAATCCACAGGCTCTTATCTAATGCTAAACATATACCCTTACTATGACTACATGCAATCAAATGGAGTGATTCCATTGGATTATGCACTCTTCAAACCTCTCCCTCCGAACAAAGAAGCCGTCGATTCCAATACCCTTCTCCACTACACCAATGTCTTTGATGCCATGGTTGATGCCGCATACTTTGCCATGGCTTTTCTAAATTACACCAACATTCCTGTAGTAGTAACTGAGTCAGGGTGGCCCTCAAAAGGTGGCTCCAATGAACCTGATGCAACGGTAGACAATGCCAATACTTACAACAGCAATTTGATCAAGCATGTGTTTAACAAAACTGGAACTCCCAAACATCCTGGAATTGCTGTTAGTACATACATCTATGAGCTCTACAACGAGGATATGAAGCCTGGGCCGTTGTCAGAGAAGAACTGGGGACTGTTTGATGCAAATGGGACACCTATTTACATTTTACACTTGACAGGATCAGGGGCGGTCTTAGCAAATGATACCAGCAATCAAACTTTCTGCATTGCAAAGGATGGTGCTGACCCAAAGATGCTGCAGGCTGCACTAGATTGGGCATGTGGACCGGGCAAGGTTGAATGCTCTCCATTGCTGCAAGGGCAACCGTGCTATGAACCAGACAATGTGATTTCACATGCAAATTATGCGTTTGACACTTACTATCATAAGATGGGAAAGACTCCTGATGCATGTGACTTCAATGGAGTGGCTACGATCTCCACCTCAGATCCAAGTCATGGTTCTTGTTTATTTCCTGGAAGTCTTGGCAAAAATGGCACCTTAGGTAACTTAACAGCTCCATCCGTGAATTCTACAAATTCAGATTCCTCAGCCTACAACCTTCGCAGCTGTGACTTGAGAATTAGAAGCCTTCTAATGGTAACAGGATTTCTAATATGGGGAGTGGTTTTGCTATAA 1500 0.436 MALHFLLLFFAVVSVVAADEEAFIGVNIGTDLSDMPHPTQVVALLKSQQIRHVRLYDADQAMLLALAKTGIQVVVTVPNEELLAIGQSNSTAANWVSRNVVAHYPATNITAICVGSEVLTTLPNAAKVLVNAIKYIHSALVASNLDRQVKVSTPLSSSIILDSFPPSQAFFNRSLDPVLVPLLDFLQSTGSYLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLLHYTNVFDAMVDAAYFAMAFLNYTNIPVVVTESGWPSKGGSNEPDATVDNANTYNSNLIKHVFNKTGTPKHPGIAVSTYIYELYNEDMKPGPLSEKNWGLFDANGTPIYILHLTGSGAVLANDTSNQTFCIAKDGADPKMLQAALDWACGPGKVECSPLLQGQPCYEPDNVISHANYAFDTYYHKMGKTPDACDFNGVATISTSDPSHGSCLFPGSLGKNGTLGNLTAPSVNSTNSDSSAYNLRSCDLRIRSLLMVTGFLIWGVVLL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2871 499 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 484 IPR044965 GO:0004553|GO:0005975
Ssu6g2871 499 Gene3D Glycosidases 23 349 - -
Ssu6g2871 499 SMART X8_cls 360 445 IPR012946 -
Ssu6g2871 499 Pfam X8 domain 361 432 IPR012946 -
Ssu6g2871 499 SUPERFAMILY (Trans)glycosidases 24 343 IPR017853 -
Ssu6g2871 499 Pfam Glycosyl hydrolases family 17 24 343 IPR000490 GO:0004553|GO:0005975
Ssu6g2871 499 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Ssu6g2871 499 Gene3D - 354 445 - -
Ssu6g2871 499 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 6 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2871 Ssu-Chr6 66615159 66617852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2871 18 468 Glycoside Hydrolase AT1G66250 76.159 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2871 K19891 - gmx:100799965 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1446 9 49643635 49646789 Ssu6g2871 6 66615159 66617852 PCT